RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 HIPK3Q9H422 1215 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 CHST12Q9NRB3 414 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 FAM105AQ9NUU6 356 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 RAB20Q9NX57 234 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 AJAP1Q9UKB5 411 aaPredicted RBP11.03□□□□□ -0.64
SRP54-208ENST00000555557 LUC7L2Q9Y383 392 aaKnown RBP11.03□□□□□ -0.64
SRP54-208ENST00000555557 FHOD1Q9Y613 1164 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 P4HA2O15460 535 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 IL18RAPO95256 599 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 TPM1P09493 284 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 UCHL3P15374 230 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 CYP2C18P33260 490 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 GUCY2FP51841 1108 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 YARSP54577 528 aaKnown RBP11.03□□□□□ -0.64
SRP54-208ENST00000555557 TRIM14Q14142 442 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 KYAT1Q16773 422 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 DUOXA2Q1HG44 320 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 GLRA4Q5JXX5 417 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 C1orf53Q5VUE5 145 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 PHLDB3Q6NSJ2 640 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 RRAGAQ7L523 313 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 CACNA2D4Q7Z3S7 1137 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 NECAB2Q7Z6G3 386 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 RTN4RL1Q86UN2 441 aaPredicted RBP11.03□□□□□ -0.64
SRP54-208ENST00000555557 USP38Q8NB14 1042 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 FBXL13Q8NEE6 735 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 LPPQ93052 612 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 CCDC51Q96ER9 411 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 ZMAT2Q96NC0 199 aaKnown RBP11.03□□□□□ -0.64
SRP54-208ENST00000555557 COQ4Q9Y3A0 265 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.03□□□□□ -0.64
SRP54-208ENST00000555557 SQORQ9Y6N5 450 aa11.03□□□□□ -0.64
SRP54-208ENST00000555557 PITPNM1O00562 1244 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 PMM2O15305 246 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 PHACTR2O75167 634 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 HLA-DRAP01903 254 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 TMEM191BP0C7N4 346 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 DSC3Q14574 896 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 SURF1Q15526 300 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 FIGNQ5HY92 759 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 IQCEQ6IPM2 695 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 SPOPLQ6IQ16 392 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 TRAPPC11Q7Z392 1133 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 CNGA4Q8IV77 575 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 ARHGEF19Q8IW93 802 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 RNF169Q8NCN4 708 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 CCDC150Q8NCX0 1101 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 BAP1Q92560 729 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 TATDN2Q93075 761 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 KIF12Q96FN5 646 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 SNX27Q96L92 541 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 WNT8AQ9H1J5 351 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 ASB7Q9H672 318 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 PLCB1Q9NQ66 1216 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 ABHD10Q9NUJ1 306 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 TMEM39AQ9NV64 488 aa11.02□□□□□ -0.65
SRP54-208ENST00000555557 A0A1W2PQJ5 194 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 LRRC53A6NM62 1247 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 RRP9O43818 475 aaKnown RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 PNMA6AP0CW24 399 aaPredicted RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 PIK3CAP42336 1068 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 AFF1P51825 1210 aaKnown RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 ZBED6P86452 979 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 RAPGEF1Q13905 1077 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 TCTN1Q2MV58 587 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 E4F1Q66K89 784 aaPredicted RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 ALKAL1Q6UXT8 129 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 DBF4BQ8NFT6 615 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 OR8K1Q8NGG5 319 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 KAT5Q92993 513 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 ANKRD36BP1Q96IX9 119 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 ZFP42Q96MM3 310 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 UBE2TQ9NPD8 197 aaPredicted RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 CEP72Q9P209 647 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 APEX2Q9UBZ4 518 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 DNAJC12Q9UKB3 198 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 A0A0U1RQF3 1178 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 CLSTN1O94985 981 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 TNNC2P02585 160 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 KRT19P08727 400 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 CLTBP09497 229 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 CCZ1BP86790 482 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 CCZ1P86791 482 aaPredicted RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 POU5F1Q01860 360 aaKnown RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 NCOA4Q13772 614 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 TMEM132DQ14C87 1099 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 ARHGAP44Q17R89 818 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 DEFB128Q7Z7B8 93 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 C1orf127Q8N9H9 656 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 ZNF397Q8NF99 534 aaPredicted RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 LINC01599Q8WXQ3 324 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 C18orf25Q96B23 403 aaPredicted RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 NAA15Q9BXJ9 866 aaKnown RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 PLEKHA5Q9HAU0 1116 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 APOBEC3GQ9HC16 384 aaKnown RBP11.01□□□□□ -0.65
SRP54-208ENST00000555557 TBX21Q9UL17 535 aa11.01□□□□□ -0.65
SRP54-208ENST00000555557 SMIM28A0A1B0GU29 152 aa11□□□□□ -0.65
SRP54-208ENST00000555557 ITGB3P05106 788 aa11□□□□□ -0.65
SRP54-208ENST00000555557 SKILP12757 684 aa11□□□□□ -0.65
SRP54-208ENST00000555557 ITGA4P13612 1032 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms