RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TMCO2Q7Z6W1 182 aaPredicted RBP13.21□□□□□ -0.29
DDX55-210ENST00000543016 FAM114A1Q8IWE2 563 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 FAM186BQ8IYM0 893 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 BEST2Q8NFU1 509 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 ENOX1Q8TC92 643 aaKnown RBP13.21□□□□□ -0.29
DDX55-210ENST00000543016 FNBP1Q96RU3 617 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 DUSP9Q99956 384 aaKnown RBP13.21□□□□□ -0.29
DDX55-210ENST00000543016 BPIFA3Q9BQP9 254 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 SLC28A3Q9HAS3 691 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 PCDHB12Q9Y5F1 795 aa13.21□□□□□ -0.29
DDX55-210ENST00000543016 SYCE3A1L190 88 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 LINC01553A4QN01 128 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 STX10O60499 249 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 AKAP3O75969 853 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 POMCP01189 267 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 CA3P07451 260 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 DNAJB2P25686 324 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 GATMP50440 423 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 CLDN10P78369 228 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 TMEM132DQ14C87 1099 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 DUOXA2Q1HG44 320 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 PAN2Q504Q3 1202 aaKnown RBP13.2□□□□□ -0.3
DDX55-210ENST00000543016 SPOUT1Q5T280 376 aaKnown RBP13.2□□□□□ -0.3
DDX55-210ENST00000543016 SPATA1Q5VX52 437 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 WDR49Q8IV35 697 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 COLGALT2Q8IYK4 626 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 RDH13Q8NBN7 331 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 TIFAQ96CG3 184 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 FAM212AQ96EL1 285 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 KIF12Q96FN5 646 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 ZNF558Q96NG5 402 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 TGS1Q96RS0 853 aaKnown RBP13.2□□□□□ -0.3
DDX55-210ENST00000543016 FUCA2Q9BTY2 467 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 COLEC11Q9BWP8 271 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 THAP9Q9H5L6 903 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 CWH43Q9H720 699 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 MIOSQ9NXC5 875 aa13.2□□□□□ -0.3
DDX55-210ENST00000543016 ARMCX3Q9UH62 379 aaPredicted RBP13.2□□□□□ -0.3
DDX55-210ENST00000543016 MRPL42Q9Y6G3 142 aaKnown RBP13.2□□□□□ -0.3
DDX55-210ENST00000543016 TNRC18O15417 2968 aaPredicted RBP13.19□□□□□ -0.3
DDX55-210ENST00000543016 CITO14578 2027 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 TRIM49BA6NDI0 452 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 C5orf67F2Z3F1 127 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 MEFVO15553 781 aaPredicted RBP13.19□□□□□ -0.3
DDX55-210ENST00000543016 LRPAP1P30533 357 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 GTF2H1P32780 548 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 BMPR1AP36894 532 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 CASP4P49662 377 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 VAMP7P51809 220 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 MARSP56192 900 aaKnown RBP13.19□□□□□ -0.3
DDX55-210ENST00000543016 STX17P56962 302 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 ERVK-21P61565 698 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 NAB2Q15742 525 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 JADE1Q6IE81 842 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 DCLRE1AQ6PJP8 1040 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 PARD3BQ8TEW8 1205 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 ANKRD36BP1Q96IX9 119 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 ZMAT2Q96NC0 199 aaKnown RBP13.19□□□□□ -0.3
DDX55-210ENST00000543016 CGRRF1Q99675 332 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 SRRTQ9BXP5 876 aaKnown RBP13.19□□□□□ -0.3
DDX55-210ENST00000543016 NRDE2Q9H7Z3 1164 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 PDE11AQ9HCR9 933 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 INTS13Q9NVM9 706 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 FAN1Q9Y2M0 1017 aa13.19□□□□□ -0.3
DDX55-210ENST00000543016 YBX2Q9Y2T7 364 aaKnown RBP13.19□□□□□ -0.3
DDX55-210ENST00000543016 SMTNL1A8MU46 457 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 TMEM189-UBE2V1I3L0A0 370 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 DDHD2O94830 711 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 TNNC2P02585 160 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 GALTP07902 379 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 TNNI1P19237 187 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 PBX2P40425 430 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 AFF1P51825 1210 aaKnown RBP13.18□□□□□ -0.3
DDX55-210ENST00000543016 BCAR1P56945 870 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 MYL5Q02045 173 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 TAP1Q03518 808 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 UBE3AQ05086 875 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 BFSP1Q12934 665 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 GLRA4Q5JXX5 417 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 PPP2R2DQ66LE6 453 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 KCNT2Q6UVM3 1135 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 ZNF280BQ86YH2 543 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 COLGALT1Q8NBJ5 622 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 ZSWIM2Q8NEG5 633 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 CCDC127Q96BQ5 260 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 BORCS6Q96GS4 357 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 C11orf84Q9BUA3 381 aaPredicted RBP13.18□□□□□ -0.3
DDX55-210ENST00000543016 DNAJC25Q9H1X3 360 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 NKX2-4Q9H2Z4 354 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 SPG21Q9NZD8 308 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 MAGEC2Q9UBF1 373 aaPredicted RBP13.18□□□□□ -0.3
DDX55-210ENST00000543016 ITGA11Q9UKX5 1188 aa13.18□□□□□ -0.3
DDX55-210ENST00000543016 R3HCC1Q9Y3T6 440 aaKnown RBP13.18□□□□□ -0.3
DDX55-210ENST00000543016 FNDC1Q4ZHG4 1894 aaPredicted RBP13.18□□□□□ -0.3
DDX55-210ENST00000543016 PTPRSQ13332 1948 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 ARHGEF37A1IGU5 675 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 LCHNA4D1U4 455 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 TRAPPC3O43617 180 aa13.17□□□□□ -0.3
DDX55-210ENST00000543016 ZC3H11AO75152 810 aaKnown RBP eCLIP13.17□□□□□ -0.3
DDX55-210ENST00000543016 NFICP08651 508 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms