RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ZNF233A6NK53 670 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 MEFVO15553 781 aaPredicted RBP15.5■□□□□ 0.07
NUP54-216ENST00000514901 CALUO43852 315 aaPredicted RBP15.5■□□□□ 0.07
NUP54-216ENST00000514901 B4GALT3O60512 393 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 PPP1R2P41236 205 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 SURF1Q15526 300 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 ZBTB6Q15916 424 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 DCLRE1AQ6PJP8 1040 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 CRELD2Q6UXH1 353 aaPredicted RBP15.5■□□□□ 0.07
NUP54-216ENST00000514901 SLC9A9Q8IVB4 645 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 XXYLT1Q8NBI6 393 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 PPP2R3CQ969Q6 453 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 FAM212AQ96EL1 285 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 SAAL1Q96ER3 474 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 KIF12Q96FN5 646 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 FBXL18Q96ME1 805 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 KCTD10Q9H3F6 313 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 UBQLN1Q9UMX0 589 aaKnown RBP15.5■□□□□ 0.07
NUP54-216ENST00000514901 PRG3Q9Y2Y8 225 aaPredicted RBP15.5■□□□□ 0.07
NUP54-216ENST00000514901 C2CD2Q9Y426 696 aa15.5■□□□□ 0.07
NUP54-216ENST00000514901 CASTOR2A6NHX0 329 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 TMEM189-UBE2V1I3L0A0 370 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 CLIC2O15247 247 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 TADA2AO75478 443 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 ELAVL2Q12926 359 aaKnown RBP15.49■□□□□ 0.07
NUP54-216ENST00000514901 STIM1Q13586 685 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 CAMK1Q14012 370 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 NFIL3Q16649 462 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 BRSK2Q8IWQ3 736 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 BEST2Q8NFU1 509 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 MICAL1Q8TDZ2 1067 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 NSUN3Q9H649 340 aaKnown RBP15.49■□□□□ 0.07
NUP54-216ENST00000514901 RBAKQ9NYW8 714 aaPredicted RBP15.49■□□□□ 0.07
NUP54-216ENST00000514901 KIAA1468Q9P260 1216 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 MAN1B1Q9UKM7 699 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 ADAM28Q9UKQ2 775 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 TRAF3IP3Q9Y228 551 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 SSX2IPQ9Y2D8 614 aa15.49■□□□□ 0.07
NUP54-216ENST00000514901 GOLGA8IPA6NC78 632 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 GOLGA8JA6NMD2 632 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 FSCN2O14926 492 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 NCK2O43639 380 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 PAX3P23760 479 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 DNAJB1P25685 340 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 RPL13P26373 211 aaKnown RBP15.48■□□□□ 0.07
NUP54-216ENST00000514901 TMEM132DQ14C87 1099 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 UPP1Q16831 310 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 SPATA1Q5VX52 437 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 TMC7Q7Z402 723 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 TMEM173Q86WV6 379 aaPredicted RBP15.48■□□□□ 0.07
NUP54-216ENST00000514901 VPS52Q8N1B4 723 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 TRIML1Q8N9V2 468 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 NOC3LQ8WTT2 800 aaKnown RBP15.48■□□□□ 0.07
NUP54-216ENST00000514901 CACTINQ8WUQ7 758 aaKnown RBP15.48■□□□□ 0.07
NUP54-216ENST00000514901 ERCC4Q92889 916 aaPredicted RBP15.48■□□□□ 0.07
NUP54-216ENST00000514901 CLSTN2Q9H4D0 955 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 DMAC2Q9NW81 257 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 MARCH5Q9NX47 278 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 MAPK8IP1Q9UQF2 711 aa15.48■□□□□ 0.07
NUP54-216ENST00000514901 SF3B1O75533 1304 aaKnown RBP eCLIP15.47■□□□□ 0.07
NUP54-216ENST00000514901 PODXLO00592 558 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 TRAPPC3O43617 180 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 EXOC3O60645 756 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 B3GAT3O94766 335 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 MBD3O95983 291 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 SOD2P04179 222 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 CTSAP10619 480 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 LRPAP1P30533 357 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 PRCPP42785 496 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 CYP2J2P51589 502 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 CLCNKBP51801 687 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 ERVFC1P60507 584 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 SOX4Q06945 474 aaPredicted RBP15.47■□□□□ 0.07
NUP54-216ENST00000514901 MORC3Q14149 939 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 SMC1AQ14683 1233 aaKnown RBP15.47■□□□□ 0.07
NUP54-216ENST00000514901 SNRNP35Q16560 246 aaKnown RBP15.47■□□□□ 0.07
NUP54-216ENST00000514901 CAMK4Q16566 473 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 JADE1Q6IE81 842 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 GPR65Q8IYL9 337 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 MAFAQ8NHW3 353 aaPredicted RBP15.47■□□□□ 0.07
NUP54-216ENST00000514901 BCL7CQ8WUZ0 217 aaPredicted RBP15.47■□□□□ 0.07
NUP54-216ENST00000514901 C18orf25Q96B23 403 aaPredicted RBP15.47■□□□□ 0.07
NUP54-216ENST00000514901 TCF25Q9BQ70 676 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 ENTPD7Q9NQZ7 604 aa15.47■□□□□ 0.07
NUP54-216ENST00000514901 FSD2A1L4K1 749 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 CXCL14O95715 111 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 EFEMP2O95967 443 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 NR3C1P04150 777 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 SPAG1Q07617 926 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 EDRF1Q3B7T1 1238 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 USP41Q3LFD5 358 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 CENPPQ6IPU0 288 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 FUT10Q6P4F1 479 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 CBWD2Q8IUF1 395 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 SMYD4Q8IYR2 804 aaPredicted RBP15.46■□□□□ 0.07
NUP54-216ENST00000514901 RNF168Q8IYW5 571 aaPredicted RBP15.46■□□□□ 0.07
NUP54-216ENST00000514901 ADSSL1Q8N142 457 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 MICALL1Q8N3F8 863 aa15.46■□□□□ 0.07
NUP54-216ENST00000514901 MRPL43Q8N983 215 aaKnown RBP15.46■□□□□ 0.07
NUP54-216ENST00000514901 ZSWIM2Q8NEG5 633 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms