RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 CFHR1Q03591 330 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 HSP90AA2PQ14568 343 aaPredicted RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 UGCGQ16739 394 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 PDZD4Q76G19 769 aaPredicted RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 SMAP1Q8IYB5 467 aaPredicted RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 TMEFF1Q8IYR6 380 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 HDDC3Q8N4P3 179 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 ZFYVE19Q96K21 471 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 DCBLD2Q96PD2 775 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 EIF2AQ9BY44 585 aaKnown RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 PRORYQ9H606 182 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 NRBP2Q9NSY0 501 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 SUCLA2Q9P2R7 463 aaPredicted RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 RELNP78509 3460 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 FLNCQ14315 2725 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 LRRK2Q5S007 2527 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 ARHGEF37A1IGU5 675 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 FAM86B1E9PN63 330 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 CAPN9O14815 690 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 MOSPD3O75425 235 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 KIF4AO95239 1232 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 APBB3O95704 486 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 LRG1P02750 347 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 FAM86B2P0C5J1 330 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 GJA1P17302 382 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 CYP4F3Q08477 520 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 FCHO2Q0JRZ9 810 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 TARBP2Q15633 366 aaKnown RBP13.31□□□□□ -0.28
USP11-208ENST00000480104 PDXDC1Q6P996 788 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 NIPA1Q7RTP0 329 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 PLA2G4DQ86XP0 818 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 CNNM3Q8NE01 707 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 CAMK1GQ96NX5 476 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 MINDY3Q9H8M7 445 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 IFT122Q9HBG6 1241 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 FSCN3Q9NQT6 498 aa13.31□□□□□ -0.28
USP11-208ENST00000480104 RNF40O75150 1001 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 ITPKBP27987 946 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 ZNF76P36508 570 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 DNM2P50570 870 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 TRIP6Q15654 476 aaKnown RBP13.3□□□□□ -0.28
USP11-208ENST00000480104 FSTL4Q6MZW2 842 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 HS6ST3Q8IZP7 471 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 GSTCDQ8NEC7 633 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 TMEM209Q96SK2 561 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 ZNF577Q9BSK1 485 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 GTPBP2Q9BX10 602 aaKnown RBP13.3□□□□□ -0.28
USP11-208ENST00000480104 ANO3Q9BYT9 981 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 SLITRK6Q9H5Y7 841 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 EBF1Q9UH73 591 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 SAMM50Q9Y512 469 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 CDY1Q9Y6F8 540 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 VWA8A3KMH1 1905 aa13.3□□□□□ -0.28
USP11-208ENST00000480104 IGKV6-21A0A0C4DH24 114 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 hCG_1642624A0A1W2PR95 340 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 TMEM150BA6NC51 233 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 IFIT3O14879 490 aaKnown RBP13.29□□□□□ -0.28
USP11-208ENST00000480104 PLEKHA8P1O95397 391 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 CD59P13987 128 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 SREBF1P36956 1147 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 DGKEP52429 567 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 MFAP1P55081 439 aaKnown RBP13.29□□□□□ -0.28
USP11-208ENST00000480104 TNK2Q07912 1038 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 SPIRE1Q08AE8 756 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 GRIK3Q13003 919 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 HNRNPDQ14103 355 aaKnown RBP13.29□□□□□ -0.28
USP11-208ENST00000480104 IMMTQ16891 758 aaKnown RBP13.29□□□□□ -0.28
USP11-208ENST00000480104 MTERF2Q49AM1 385 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 CYP4A22Q5TCH4 519 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 PCSK4Q6UW60 755 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 CATIPQ7Z7H3 387 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 C11orf74Q86VG3 221 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 E2F7Q96AV8 911 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 CEP89Q96ST8 783 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 SH2D3AQ9BRG2 576 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 TPSD1Q9BZJ3 242 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 MTRRQ9UBK8 725 aa13.29□□□□□ -0.28
USP11-208ENST00000480104 ATG2BQ96BY7 2078 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 GOLGA4Q13439 2230 aaKnown RBP13.28□□□□□ -0.28
USP11-208ENST00000480104 DOPEY2Q9Y3R5 2298 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 IGLV3-22A0A075B6J6 115 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 NBPF19A0A087WUL8 3843 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 CAPN8A6NHC0 703 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 CASTOR2A6NHX0 329 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 PRRG1O14668 218 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 OPHN1O60890 802 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 MS4A1P11836 297 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 ATXN3P54252 364 aaPredicted RBP13.28□□□□□ -0.28
USP11-208ENST00000480104 GRSF1Q12849 480 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP11-208ENST00000480104 TEAD2Q15562 447 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 TMEM196Q5HYL7 178 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 MARCH9Q86YJ5 346 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 GPIHBP1Q8IV16 184 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 CMTR1Q8N1G2 835 aaKnown RBP13.28□□□□□ -0.28
USP11-208ENST00000480104 FAM181AQ8N9Y4 354 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 LRRC3BQ96PB8 259 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 NXF3Q9H4D5 531 aaKnown RBP13.28□□□□□ -0.28
USP11-208ENST00000480104 TBC1D22BQ9NU19 505 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 TMEM74BQ9NUR3 256 aa13.28□□□□□ -0.28
USP11-208ENST00000480104 SEPT9Q9UHD8 586 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms