RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 F5H6K3 240 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 O00370 1275 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 PODXLO00592 558 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 PDXKO00764 312 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 KIAA0355O15063 1070 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 SLC16A3O15427 465 aaKnown RBP10.27□□□□□ -0.77
HDAC3-205ENST00000469550 PGK2P07205 417 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 PLA2G4BP0C869 781 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 CYP11B2P19099 503 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 NR2F2P24468 414 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 OAZ1P54368 228 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 GALCP54803 685 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 MYO1EQ12965 1108 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 MAPK7Q13164 816 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 MKRN4PQ13434 485 aaPredicted RBP10.27□□□□□ -0.77
HDAC3-205ENST00000469550 ZDHHC24Q6UX98 284 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 TBC1D1Q86TI0 1168 aaPredicted RBP10.27□□□□□ -0.77
HDAC3-205ENST00000469550 GMCL1P1Q8NEA9 526 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 HAS1Q92839 578 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 TBC1D31Q96DN5 1066 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 TRIM51Q9BSJ1 452 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 SIX2Q9NPC8 291 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 HOMER3Q9NSC5 361 aa10.27□□□□□ -0.77
HDAC3-205ENST00000469550 TRIM43BA6NCK2 446 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CALUO43852 315 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 RARAP10276 462 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 TAL1P17542 331 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 IBSPP21815 317 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CST5P28325 142 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CHRNA3P32297 505 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 STAT1P42224 750 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CLK2P49760 499 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 HADHBP55084 474 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 NCALDP61601 193 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SMAD3P84022 425 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 TLE2Q04725 743 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 BNIP1Q12981 228 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SLC29A2Q14542 456 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 PPP2R5AQ15172 486 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SHHQ15465 462 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CNGA2Q16280 664 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 BZW1Q7L1Q6 419 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 JAMLQ86YT9 394 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 ARMC2Q8NEN0 867 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 KLHDC9Q8NEP7 349 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 AGAP11Q8TF27 550 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 BADQ92934 168 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 TRIM43Q96BQ3 446 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 IFT74Q96LB3 600 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 RUNDC3BQ96NL0 473 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 TOX2Q96NM4 488 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 PRMT1Q99873 361 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CPVLQ9H3G5 476 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 AZI2Q9H6S1 392 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SLC38A10Q9HBR0 1119 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 ARHGEF3Q9NR81 526 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 MTRF1LQ9UGC7 380 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 DDX25Q9UHL0 483 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 PCDHA12Q9UN75 941 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 USP15Q9Y4E8 981 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 LAMA3Q16787 3333 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 TMEM265A0A087WTH1 108 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 A0A1W2PQ45 241 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 A0A1W2PQY0 241 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 WFS1O76024 890 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SUN1O94901 812 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 GGPS1O95749 300 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SNAI1O95863 264 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 VIMP08670 466 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CLTBP09497 229 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 FDX1P10109 184 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 RARGP13631 454 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 RPL13P26373 211 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SKIV2L2P42285 1042 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 PTGIRP43119 386 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 IFI35P80217 286 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 TCEAL1Q15170 157 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 KNOP1Q1ED39 458 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 BMT2Q1RMZ1 405 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 ZNF697Q5TEC3 545 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 DCAF12L1Q5VU92 463 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CDCA2Q69YH5 1023 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SNRNP48Q6IEG0 339 aaKnown RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CCSAPQ6IQ19 270 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 EP400NLQ6ZTU2 488 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 EPM2AIP1Q7L775 607 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 ANKRD33Q7Z3H0 272 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 GPBP1Q86WP2 473 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 OLIG1Q8TAK6 271 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 SLC35G2Q8TBE7 412 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 PRDM5Q9NQX1 630 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 MTMR4Q9NYA4 1195 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 GRHL1Q9NZI5 618 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 FBXO40Q9UH90 709 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 PCYOX1Q9UHG3 505 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 FEM1BQ9UK73 627 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 CORO1CQ9ULV4 474 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-205ENST00000469550 AGAP1Q9UPQ3 857 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 NR2E1Q9Y466 385 aa10.26□□□□□ -0.77
HDAC3-205ENST00000469550 MCM3APO60318 1980 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms