RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 H3BML4 177 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 KIAA0391O15091 583 aaKnown RBP5.3□□□□□ -1.56
USP40-204ENST00000427947 CD1AP06126 327 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 MALP21145 153 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 HK3P52790 923 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 RABGGTBP53611 331 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 PRKD1Q15139 912 aaPredicted RBP5.3□□□□□ -1.56
USP40-204ENST00000427947 DCAF17Q5H9S7 520 aaPredicted RBP5.3□□□□□ -1.56
USP40-204ENST00000427947 Q6ZRM9 215 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 PALM2Q8IXS6 379 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 ZFP28Q8NHY6 868 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 PPP1R35Q8TAP8 253 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 EDAQ92838 391 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 CCDC136Q96JN2 1154 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 C8orf48Q96LL4 319 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 KLC2Q9H0B6 622 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 LMBRD1Q9NUN5 540 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 POGKQ9P215 609 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 ABCF2Q9UG63 623 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 CLCA2Q9UQC9 943 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 STXBP5LQ9Y2K9 1186 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 MUSKO15146 869 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 GRM6O15303 877 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 UBXN7O94888 489 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 ARIH2O95376 493 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 POMCP01189 267 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 SBK3P0C264 359 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 MGAT1P26572 445 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 HTR1BP28222 390 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 SMARCA1P28370 1054 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 IL12RB1P42701 662 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 MAN2A2P49641 1150 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 SNAPC2Q13487 334 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 VPS72Q15906 364 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 CSRP2Q16527 193 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 DACT2Q5SW24 774 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 C1QL3Q5VWW1 255 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 SLC4A10Q6U841 1118 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 HEATR3Q7Z4Q2 680 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 SH2D3CQ8N5H7 860 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 OR10H5Q8NGA6 315 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 CDK5RAP3Q96JB5 506 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 PHACTR3Q96KR7 559 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 FAM193BQ96PV7 902 aaPredicted RBP5.29□□□□□ -1.56
USP40-204ENST00000427947 MNTQ99583 582 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 C1orf112Q9NSG2 853 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 OBP2AQ9NY56 170 aa5.29□□□□□ -1.56
USP40-204ENST00000427947 DDX20Q9UHI6 824 aaKnown RBP5.29□□□□□ -1.56
USP40-204ENST00000427947 FEZ2Q9UHY8 353 aaPredicted RBP5.29□□□□□ -1.56
USP40-204ENST00000427947 KLRG2A4D1S0 409 aaPredicted RBP5.28□□□□□ -1.56
USP40-204ENST00000427947 GOLGA6L6A8MZA4 724 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 H3BUI4 141 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 B3GALT2O43825 422 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 AMHP03971 560 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 MTHFD1P11586 935 aaKnown RBP5.28□□□□□ -1.56
USP40-204ENST00000427947 ALAS1P13196 640 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 SCNN1GP51170 649 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 CNGB1Q14028 1251 aaPredicted RBP5.28□□□□□ -1.56
USP40-204ENST00000427947 RRP1BQ14684 758 aaKnown RBP5.28□□□□□ -1.56
USP40-204ENST00000427947 GRM3Q14832 879 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 FLYWCH1Q4VC44 716 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 PABPC1LQ4VXU2 614 aaKnown RBP5.28□□□□□ -1.56
USP40-204ENST00000427947 METTL24Q5JXM2 366 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 DRICH1Q6PGQ1 229 aaPredicted RBP5.28□□□□□ -1.56
USP40-204ENST00000427947 OVCH2Q7RTZ1 564 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 DAAM2Q86T65 1068 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 KLHDC4Q8TBB5 520 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 SLC35A4Q96G79 324 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 NDC1Q9BTX1 674 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 ARMT1Q9H993 441 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 PRDM11Q9NQV5 511 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 FBXO34Q9NWN3 711 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 GABBR1Q9UBS5 961 aa5.28□□□□□ -1.56
USP40-204ENST00000427947 FRMPD2Q68DX3 1309 aaPredicted RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 ARID1BQ8NFD5 2236 aaPredicted RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 CDHR4A6H8M9 788 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 NT5C1B-RDH14C9J2C7 533 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 F2RL2O00254 374 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 KIF3BO15066 747 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 HAUS5O94927 633 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 ITGB1P05556 798 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 MAGEA10P43363 369 aaPredicted RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 GBX1Q14549 363 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 UBXN2BQ14CS0 331 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 R3HDM1Q15032 1099 aaKnown RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 SYT12Q8IV01 421 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 NLGN4YQ8NFZ3 816 aaPredicted RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 DVL3Q92997 716 aaPredicted RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 FAM167AQ96KS9 214 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 CDK5RAP1Q96SZ6 601 aaKnown RBP5.27□□□□□ -1.57
USP40-204ENST00000427947 LRFN3Q9BTN0 628 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 PACSIN1Q9BY11 444 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 B3GNT5Q9BYG0 378 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 WDCPQ9H6R7 721 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 UNC79Q9P2D8 2635 aa5.27□□□□□ -1.57
USP40-204ENST00000427947 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 DRGXA6NNA5 263 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 FAM227AF5H4B4 570 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 LEFTY2O00292 366 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 TUSC2O75896 110 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms