RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CCDC80Q76M96 950 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ZNF572Q7Z3I7 529 aaPredicted RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 SLC44A5Q8NCS7 719 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 PWWP2AQ96N64 755 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 FAM111AQ96PZ2 611 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 SERPINI1Q99574 410 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 APOL6Q9BWW8 343 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 INTS2Q9H0H0 1204 aaKnown RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ZNF180Q9UJW8 692 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 TMA7Q9Y2S6 64 aaKnown RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ABCA9Q8IUA7 1624 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 PI4K2BG5E9Z4 385 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 USP1O94782 785 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 IMPDH2P12268 514 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ARL4CP56559 192 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 RHPN2Q8IUC4 686 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 AGR3Q8TD06 166 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ZFAND2BQ8WV99 257 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 PRPF18Q99633 342 aaKnown RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 DRC3Q9H069 523 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 TRPV6Q9H1D0 765 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 TRPC5Q9UL62 973 aaPredicted RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 CEP170BQ9Y4F5 1589 aaPredicted RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 CEMIPQ8WUJ3 1361 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 CD58P19256 250 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 MXI1P50539 228 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 RTP1P59025 263 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 TSPY1Q01534 308 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 AP1B1Q10567 949 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 RASA3Q14644 834 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 DSTYKQ6XUX3 929 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 C4orf50Q6ZRC1 276 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 TSHZ1Q6ZSZ6 1077 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 CADPS2Q86UW7 1296 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 DGKHQ86XP1 1220 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 DDHD1Q8NEL9 900 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 KRT35Q92764 455 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 STK33Q9BYT3 514 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 PAIP1Q9H074 479 aaKnown RBP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ARHGEF38Q9NXL2 777 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 LRRC42Q9Y546 428 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 H0YGN5 161 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TLR2O60603 784 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 KRT37O76014 449 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 EIF2B2P49770 351 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TUBP50607 506 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ZNF200P98182 395 aaPredicted RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TBL3Q12788 808 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 MPP3Q13368 585 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 PKN2Q16513 984 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TRMT5Q32P41 509 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 WDR78Q5VTH9 848 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 RFWD3Q6PCD5 774 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 KIAA2013Q8IYS2 634 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TBC1D16Q8TBP0 767 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ZNF75CPQ92670 426 aaPredicted RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC68Q9H2F9 335 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ERVK-5Q9HDB9 667 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 DOLKQ9UPQ8 538 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TDRKHQ9Y2W6 561 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 SH3GLB1Q9Y371 365 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 NFS1Q9Y697 457 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 USP31Q70CQ4 1352 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 JCADQ9P266 1359 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 GOLGA8IPA6NC78 632 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 GOLGA8JA6NMD2 632 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 FCHO1O14526 889 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 LSM1O15116 133 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TNNI1P19237 187 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 SMAD1Q15797 465 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 GSTA3Q16772 222 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 HGSNATQ68CP4 663 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 C3orf62Q6ZUJ4 267 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 PATL1Q86TB9 770 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 CCDC24Q8N4L8 307 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TTC16Q8NEE8 873 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 EME1Q96AY2 570 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 NT5C1BQ96P26 610 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 FBXO6Q9NRD1 293 aaPredicted RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 R3HDM2Q9Y2K5 976 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 STARD13Q9Y3M8 1113 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 OATP04181 439 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 PYGMP11217 842 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 RPA3P35244 121 aaPredicted RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 GRB10Q13322 594 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 OASLQ15646 514 aaKnown RBP9.83□□□□□ -0.84
COL28A1-201ENST00000399429 HIF1AQ16665 826 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 KLHL38Q2WGJ6 581 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 SLC45A4Q5BKX6 768 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ZNF554Q86TJ5 538 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 NLRP10Q86W26 655 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 SLFN12Q8IYM2 578 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ATP11CQ8NB49 1132 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ATP8B4Q8TF62 1192 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 GDPD5Q8WTR4 605 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ZNF333Q96JL9 665 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 ECSITQ9BQ95 431 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 TMEM47Q9BQJ4 181 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 MXD3Q9BW11 206 aa9.83□□□□□ -0.84
COL28A1-201ENST00000399429 SPATA16Q9BXB7 569 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms