RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 UBE2OQ9C0C9 1292 aaKnown RBP15.29■□□□□ 0.04
SDC1-201ENST00000254351 WDR35Q9P2L0 1181 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 RABGAP1Q9Y3P9 1069 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 EMSYQ7Z589 1322 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 PNMA6FA0A0J9YX94 578 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 EML1O00423 815 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 ETS1P14921 441 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 RASSF2P50749 326 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 SCNN1BP51168 640 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 SPDYCQ5MJ68 293 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 NLRP9Q7RTR0 991 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 ANKMY2Q8IV38 441 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 AGGF1Q8N302 714 aaeCLIP15.29■□□□□ 0.04
SDC1-201ENST00000254351 RFWD2Q8NHY2 731 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 P2RX7Q99572 595 aaKnown RBP15.29■□□□□ 0.04
SDC1-201ENST00000254351 MKNK1Q9BUB5 465 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 ANO3Q9BYT9 981 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 TRABDQ9H4I3 376 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 ZNF287Q9HBT7 754 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 DDX39AO00148 427 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 LIN7AO14910 233 aaPredicted RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 TBX10O75333 385 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 GYS1P13807 737 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 MARK3P27448 753 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 NOP14P78316 857 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 PLEKHG4Q58EX7 1191 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ACSBG2Q5FVE4 666 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ZNF365Q70YC5 407 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 CROCCP2Q86T23 111 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 NBPF5PQ86XG9 351 aaPredicted RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 RHOT2Q8IXI1 618 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.28■□□□□ 0.04
SDC1-201ENST00000254351 RBM15Q96T37 977 aaKnown RBP eCLIP15.28■□□□□ 0.04
SDC1-201ENST00000254351 LY75O60449 1722 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 FAM86B1E9PN63 330 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 FAM86B2P0C5J1 330 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ODR4Q5SWX8 454 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 NOP9Q86U38 636 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 MFN1Q8IWA4 741 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 LINC00116Q8NCU8 138 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 DHX38Q92620 1227 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 STMN2Q93045 179 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 SNF8Q96H20 258 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 TTC1Q99614 292 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 MTMR4Q9NYA4 1195 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 DIS3Q9Y2L1 958 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 A0A1B0GUL6 1792 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ANKRD33BA6NCL7 494 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 GYG2O15488 501 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 CDH16O75309 829 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 EEF2P13639 858 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 PLS3P13797 630 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 PSMC4P43686 418 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 PPP2R5CQ13362 524 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 THOC5Q13769 683 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 SIX1Q15475 284 aaPredicted RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 LVRNQ6Q4G3 990 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 HS2ST1Q7LGA3 356 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ZNF804AQ7Z570 1209 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 TTC7BQ86TV6 843 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ANKRD35Q8N283 1001 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 GLIS1Q8NBF1 620 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 GORASP1Q9BQQ3 440 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 CADM1Q9BY67 442 aaKnown RBP15.28■□□□□ 0.04
SDC1-201ENST00000254351 ARL8BQ9NVJ2 186 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 ANAPC7Q9UJX3 599 aa15.28■□□□□ 0.04
SDC1-201ENST00000254351 MIF4GDA9UHW6 222 aaKnown RBP15.27■□□□□ 0.04
SDC1-201ENST00000254351 PI4K2BG5E9Z4 385 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 IZUMO3Q5VZ72 239 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 PPP1R21Q6ZMI0 780 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 OTOAQ7RTW8 1153 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 FAM178BQ8IXR5 827 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 PDCD7Q8N8D1 485 aaKnown RBP15.27■□□□□ 0.04
SDC1-201ENST00000254351 ZNF333Q96JL9 665 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 PICK1Q9NRD5 415 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 ZBTB21Q9ULJ3 1066 aa15.27■□□□□ 0.04
SDC1-201ENST00000254351 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.27■□□□□ 0.04
SDC1-201ENST00000254351 MYH14Q7Z406 1995 aaKnown RBP15.27■□□□□ 0.03
SDC1-201ENST00000254351 CNTNAP4Q9C0A0 1308 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 USP1O94782 785 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 BMP3P12645 472 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 CD58P19256 250 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 P3H1Q32P28 736 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 TBC1D25Q3MII6 688 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 CFAP157Q5JU67 520 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 C16orf86Q6ZW13 317 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 SYT2Q8N9I0 419 aaPredicted RBP15.27■□□□□ 0.03
SDC1-201ENST00000254351 ACSF2Q96CM8 615 aaPredicted RBP15.27■□□□□ 0.03
SDC1-201ENST00000254351 CLPTM1LQ96KA5 538 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 TMEM109Q9BVC6 243 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 C10orf88Q9H8K7 445 aa15.27■□□□□ 0.03
SDC1-201ENST00000254351 CCNL1Q9UK58 526 aaPredicted RBP15.27■□□□□ 0.03
SDC1-201ENST00000254351 IFNB1P01574 187 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 ADRA1DP25100 572 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 GSTT1P30711 240 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 CETN2P41208 172 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 ARHGAP4P98171 946 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 EFTUD2Q15029 972 aaKnown RBP eCLIP15.26■□□□□ 0.038e-9■■■■■ 27
SDC1-201ENST00000254351 QRICH1Q2TAL8 776 aa15.26■□□□□ 0.03
SDC1-201ENST00000254351 OR52E8Q6IFG1 317 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms