RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZC3H11AO75152 810 aaKnown RBP eCLIP19.74■□□□□ 0.75
CLN3-239ENST00000628023 LINC00271P0C7V0 271 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 IL9P15248 144 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 LAG3P18627 525 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 GRM5P41594 1212 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 SCNN1GP51170 649 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 PSMD2Q13200 908 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 COL19A1Q14993 1142 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 POMGNT1Q8WZA1 660 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 ACAP3Q96P50 834 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 PLAGL2Q9UPG8 496 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 PCDHB12Q9Y5F1 795 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 TISP43B9A030 160 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 PI4K2BG5E9Z4 385 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 SLC39A4Q6P5W5 647 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 LRRC55Q6ZSA7 311 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 NELFCDQ8IXH7 590 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 SMARCE1Q969G3 411 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 LRFN3Q9BTN0 628 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 IKZF4Q9H2S9 585 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 ALG13Q9NP73 1137 aaKnown RBP19.73■□□□□ 0.75
CLN3-239ENST00000628023 RMND1Q9NWS8 449 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 PRKAG3Q9UGI9 489 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 HCN4Q9Y3Q4 1203 aa19.73■□□□□ 0.75
CLN3-239ENST00000628023 ANKRD63C9JTQ0 380 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 GPR37L1O60883 481 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 ALADP13716 330 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 AFF1P51825 1210 aaKnown RBP19.72■□□□□ 0.75
CLN3-239ENST00000628023 KCNB1Q14721 858 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 KYAT1Q16773 422 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 SEZ6Q53EL9 994 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 EPM2AIP1Q7L775 607 aaPredicted RBP19.72■□□□□ 0.75
CLN3-239ENST00000628023 COLGALT1Q8NBJ5 622 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 SCFD1Q8WVM8 642 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 ZNF558Q96NG5 402 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 HAPLN2Q9GZV7 340 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 CWH43Q9H720 699 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 CD320Q9NPF0 282 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 RAPGEFL1Q9UHV5 662 aa19.72■□□□□ 0.75
CLN3-239ENST00000628023 AGO2Q9UKV8 859 aaKnown RBP19.72■□□□□ 0.75
CLN3-239ENST00000628023 A0A0B4J269 797 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 OGTO15294 1046 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 RHOBTB3O94955 611 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 KIF20AO95235 890 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 CLTAP09496 248 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 HYAL1Q12794 435 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 GRIK3Q13003 919 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 STK4Q13043 487 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 ARMCX5Q6P1M9 558 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 HS2ST1Q7LGA3 356 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 KIAA0895Q8NCT3 520 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 ZNF507Q8TCN5 953 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 NOC3LQ8WTT2 800 aaKnown RBP19.71■□□□□ 0.75
CLN3-239ENST00000628023 ERCC4Q92889 916 aaPredicted RBP19.71■□□□□ 0.75
CLN3-239ENST00000628023 IGFLR1Q9H665 355 aa19.71■□□□□ 0.75
CLN3-239ENST00000628023 KIAA1671Q9BY89 1806 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 TULP1O00294 542 aaPredicted RBP19.7■□□□□ 0.74
CLN3-239ENST00000628023 INPPL1O15357 1258 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 CSPG5O95196 566 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 ITGB1P05556 798 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 PBX3P40426 434 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 ALDH7A1P49419 539 aaKnown RBP19.7■□□□□ 0.74
CLN3-239ENST00000628023 CTC1Q2NKJ3 1217 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 GLRA4Q5JXX5 417 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 ELOA2Q8IYF1 753 aaPredicted RBP19.7■□□□□ 0.74
CLN3-239ENST00000628023 KLHL23Q8NBE8 558 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 KHSRPQ92945 711 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-239ENST00000628023 FAM122AQ96E09 287 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 NRDE2Q9H7Z3 1164 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 RPF1Q9H9Y2 349 aaKnown RBP19.7■□□□□ 0.74
CLN3-239ENST00000628023 LMBRD1Q9NUN5 540 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 STYXL1Q9Y6J8 313 aa19.7■□□□□ 0.74
CLN3-239ENST00000628023 CARNS1A5YM72 827 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 THP07101 528 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 CXCL8P10145 99 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 GARTP22102 1010 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 PPM1AP35813 382 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 TNFSF9P41273 254 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 BCAR1P56945 870 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 PPP2R3AQ06190 1150 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 KNOP1Q1ED39 458 aaKnown RBP19.69■□□□□ 0.74
CLN3-239ENST00000628023 BMT2Q1RMZ1 405 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 KCNT2Q6UVM3 1135 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 ZNF280BQ86YH2 543 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 SPPL3Q8TCT6 385 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 POF1BQ8WVV4 589 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 FAM212AQ96EL1 285 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 SNX27Q96L92 541 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 GSDMAQ96QA5 445 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 POP1Q99575 1024 aaKnown RBP19.69■□□□□ 0.74
CLN3-239ENST00000628023 MIOSQ9NXC5 875 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 ARIH1Q9Y4X5 557 aaPredicted RBP19.69■□□□□ 0.74
CLN3-239ENST00000628023 PCDHA5Q9Y5H7 936 aa19.69■□□□□ 0.74
CLN3-239ENST00000628023 PTGESO14684 152 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 DDHD2O94830 711 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 ADSSP30520 456 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 LTBRP36941 435 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 OR1G1P47890 313 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 ACOT2P49753 483 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 CAMK4Q16566 473 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms