RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF516Q92618 1163 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 GLG1Q92896 1179 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ELMO3Q96BJ8 720 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 FAM81BQ96LP2 452 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 KIAA1586Q9HCI6 787 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ZDHHC18Q9NUE0 388 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 WDR81Q562E7 1941 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 MYPNQ86TC9 1320 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 KIAA1217Q5T5P2 1943 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 SORBS3O60504 671 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ATG7O95352 703 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ATP4AP20648 1035 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 PTGIRP43119 386 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 DHX9Q08211 1270 aaKnown RBP10.82□□□□□ -0.68
VPS53-220ENST00000576149 PDCLQ13371 301 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 EMC2Q15006 297 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 SPDYCQ5MJ68 293 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 JAMLQ86YT9 394 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ZDHHC14Q8IZN3 488 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 OR2W6PQ8NHA6 318 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 BCAS4Q8TDM0 211 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 BTBD6Q96KE9 485 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 FMO2Q99518 471 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 PI4K2AQ9BTU6 479 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 TXLNGYQ9BZA5 131 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 TRIM31Q9BZY9 425 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 PPP1R1BQ9UD71 204 aaPredicted RBP10.82□□□□□ -0.68
VPS53-220ENST00000576149 PCYOX1Q9UHG3 505 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 SH3BP1Q9Y3L3 701 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 AFG3L2Q9Y4W6 797 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 PCDHA3Q9Y5H8 950 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 MAFBQ9Y5Q3 323 aaPredicted RBP10.82□□□□□ -0.68
VPS53-220ENST00000576149 STYXL1Q9Y6J8 313 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ZNF541Q9H0D2 1346 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 MYO1CO00159 1063 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 PPFIA2O75334 1257 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 PYGMP11217 842 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 KRT5P13647 590 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 ICAM3P32942 547 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 LIG4P49917 911 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 POLGP54098 1239 aaPredicted RBP10.81□□□□□ -0.68
VPS53-220ENST00000576149 PSMD6Q15008 389 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 STXBP2Q15833 593 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 CLEC16AQ2KHT3 1053 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 NOL9Q5SY16 702 aaKnown RBP10.81□□□□□ -0.68
VPS53-220ENST00000576149 SEL1L2Q5TEA6 688 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 RUFY4Q6ZNE9 571 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 EFCAB13Q8IY85 973 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 TRPM4Q8TD43 1214 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 PSPC1Q8WXF1 523 aaKnown RBP10.81□□□□□ -0.68
VPS53-220ENST00000576149 C18orf8Q96DM3 657 aa10.81□□□□□ -0.68
VPS53-220ENST00000576149 MYO1FO00160 1098 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 KIAA0391O15091 583 aaKnown RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 SPOPO43791 374 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 SCP2P22307 547 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 CYP1B1Q16678 543 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 ZACNQ401N2 412 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 CYFIP1Q7L576 1253 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 CPNE8Q86YQ8 564 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 DNERQ8NFT8 737 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 MAGOHBQ96A72 148 aaKnown RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 MTFR1LQ9H019 292 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 DHX33Q9H6R0 707 aaKnown RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 ZNF302Q9NR11 478 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 C1orf112Q9NSG2 853 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 CNOT8Q9UFF9 292 aaKnown RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 RASAL2Q9UJF2 1139 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 PODXLO00592 558 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 C4BPAP04003 597 aaKnown RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 OATP04181 439 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 UNGP13051 313 aaPredicted RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 BIRC3Q13489 604 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 SH3D19Q5HYK7 790 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 TTC27Q6P3X3 843 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 ZNF677Q86XU0 584 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 SLC13A5Q86YT5 568 aaPredicted RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 CHST13Q8NET6 341 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 TMEM143Q96AN5 459 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 FAM84AQ96KN4 292 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 PORCNQ9H237 461 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 AGO2Q9UKV8 859 aaKnown RBP10.8□□□□□ -0.68
VPS53-220ENST00000576149 SSC5DA1L4H1 1573 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 DOCK5Q9H7D0 1870 aa10.8□□□□□ -0.68
VPS53-220ENST00000576149 ZEB2O60315 1214 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 ERLIN2O94905 339 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 PIGRP01833 764 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 TNNI1P19237 187 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 GLRA2P23416 452 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 LSP1P33241 339 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 ARL2P36404 184 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 MDH1P40925 334 aaKnown RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 CCT5P48643 541 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 WNT7BP56706 349 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 RWDD2BP57060 319 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 NLRP11P59045 1033 aaKnown RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 GUCY1A3Q02108 690 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 FSTL1Q12841 308 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 STRN3Q13033 797 aa10.79□□□□□ -0.68
VPS53-220ENST00000576149 SIX1Q15475 284 aaPredicted RBP10.79□□□□□ -0.68
VPS53-220ENST00000576149 AGBL2Q5U5Z8 902 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms