RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 CEP170P1Q96L14 293 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 SYT11Q9BT88 431 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 PACSIN1Q9BY11 444 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 JPH1Q9HDC5 661 aaPredicted RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 A1CFQ9NQ94 594 aaKnown RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 PDLIM7Q9NR12 457 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 GGA3Q9NZ52 723 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 FBXO40Q9UH90 709 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 DICER1Q9UPY3 1922 aaKnown RBP7.84□□□□□ -1.16
HERPUD1-209ENST00000564678 EMSYQ7Z589 1322 aa7.84□□□□□ -1.16
HERPUD1-209ENST00000564678 SLC16A4O15374 487 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 USP2O75604 605 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 RGS20O76081 388 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 STBD1O95210 358 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 TMEM253P0C7T8 217 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 TRIM49P0CI25 452 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 TRIM49CP0CI26 452 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 TNFRSF8P28908 595 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 GTF2H1P32780 548 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 PLS1Q14651 629 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 STXBP2Q15833 593 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 EPC2Q52LR7 807 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 BRDTQ58F21 947 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 XKR3Q5GH77 459 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 ALG1LQ6GMV1 187 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 MIS18BP1Q6P0N0 1132 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 GJB7Q6PEY0 223 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 ABHD15Q6UXT9 468 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 LRRC57Q8N9N7 239 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 KHSRPQ92945 711 aaKnown RBP eCLIP7.83□□□□□ -1.162e-11■■□□□ 13.5
HERPUD1-209ENST00000564678 COL26A1Q96A83 441 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 FBXL18Q96ME1 805 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 CBWD1Q9BRT8 395 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 SELENOOQ9BVL4 669 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 TRIM55Q9BYV6 548 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 GPR88Q9GZN0 384 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 PCIF1Q9H4Z3 704 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 MED4Q9NPJ6 270 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 KMT5AQ9NQR1 393 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 AJAP1Q9UKB5 411 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 DIS3Q9Y2L1 958 aaKnown RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 COQ4Q9Y3A0 265 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 CCDC169A6NNP5 214 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 KIAA0391O15091 583 aaKnown RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 ZNF862O60290 1169 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 TNFAIP3P21580 790 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 GARTP22102 1010 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 CXCR5P32302 372 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 NOP2P46087 812 aaKnown RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 HIRAP54198 1017 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 C2orf54Q08AI8 447 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 ORC1Q13415 861 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 R3HDM1Q15032 1099 aaKnown RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 PRAMEF18Q5VWM3 479 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 SWSAP1Q6NVH7 229 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 LBX2Q6XYB7 198 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 ACTRT1Q8TDG2 376 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 PARD3BQ8TEW8 1205 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 IFT74Q96LB3 600 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 FAM81BQ96LP2 452 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 KIAA1586Q9HCI6 787 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 SUCLA2Q9P2R7 463 aaPredicted RBP7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 COMMD10Q9Y6G5 202 aa7.83□□□□□ -1.16
HERPUD1-209ENST00000564678 PFASO15067 1338 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 DENND3A2RUS2 1198 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 FOXN3O00409 490 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 NCK2O43639 380 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 FTCDO95954 541 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 OAS2P29728 719 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 MXI1P50539 228 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 GALCP54803 685 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 HADHBP55084 474 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 ACTR2P61160 394 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 PPP3CAQ08209 521 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 RAB33AQ14088 237 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 SNRNP35Q16560 246 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 PROX2Q3B8N5 592 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 C1orf220Q5T0J3 134 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 PLA2G4FQ68DD2 849 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 KRT39Q6A163 491 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 EIF1ADQ8N9N8 165 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 LNX1Q8TBB1 728 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 U2AF1L4Q8WU68 220 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 CTNNBL1Q8WYA6 563 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 RFFLQ8WZ73 363 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 MFSD14AQ96MC6 490 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 ARPC5LQ9BPX5 153 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 LRRC1Q9BTT6 524 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 ATP6V0A4Q9HBG4 840 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 UBE2TQ9NPD8 197 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 GPRC5CQ9NQ84 441 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 CYP26B1Q9NR63 512 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 SIRPGQ9P1W8 387 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 STIM2Q9P246 746 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 TMEM59LQ9UK28 342 aa7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 POLR2AP24928 1970 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 MYH9P35579 1960 aaKnown RBP7.82□□□□□ -1.16
HERPUD1-209ENST00000564678 IGSF9BQ9UPX0 1349 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms