RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 FAN1Q9Y2M0 1017 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 STYXL1Q9Y6J8 313 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 UBE4BO95155 1302 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 PRRC2BQ5JSZ5 2229 aaKnown RBP14.82□□□□□ -0.04
SHMT2-228ENST00000557302 KINO60870 393 aaKnown RBP14.82□□□□□ -0.04
SHMT2-228ENST00000557302 OR1G1P47890 313 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 UBE2HP62256 183 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 PSMD2Q13200 908 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 TUSC3Q13454 348 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 TIGD5Q53EQ6 642 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 GLRA4Q5JXX5 417 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 ZNF507Q8TCN5 953 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 POF1BQ8WVV4 589 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 POMGNT1Q8WZA1 660 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 IGSF21Q96ID5 467 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 CXCL16Q9H2A7 254 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 HOOK1Q9UJC3 728 aaKnown RBP14.82□□□□□ -0.04
SHMT2-228ENST00000557302 AGO2Q9UKV8 859 aaKnown RBP14.82□□□□□ -0.04
SHMT2-228ENST00000557302 LZTS1Q9Y250 596 aa14.82□□□□□ -0.04
SHMT2-228ENST00000557302 PRG3Q9Y2Y8 225 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-228ENST00000557302 SMIM28A0A1B0GU29 152 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 NRP1O14786 923 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 FAM189A1O60320 539 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 CSPG5O95196 566 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 CXCL8P10145 99 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 KCNE1P15382 129 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 DNAJB1P25685 340 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 ADSSP30520 456 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 TNFSF9P41273 254 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 STK4Q13043 487 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 PNOCQ13519 176 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 CCDC85BQ15834 202 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-228ENST00000557302 XKR4Q5GH76 650 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 ZBTB41Q5SVQ8 909 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 ALKAL1Q6UXT8 129 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 CLEC17AQ6ZS10 378 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 TMEM173Q86WV6 379 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-228ENST00000557302 SCFD1Q8WVM8 642 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 PPM1EQ8WY54 764 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 PPP1R10Q96QC0 940 aaKnown RBP14.81□□□□□ -0.04
SHMT2-228ENST00000557302 RPF1Q9H9Y2 349 aaKnown RBP14.81□□□□□ -0.04
SHMT2-228ENST00000557302 PLEKHA5Q9HAU0 1116 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 TLR9Q9NR96 1032 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 CNTN3Q9P232 1028 aa14.81□□□□□ -0.04
SHMT2-228ENST00000557302 CASTOR2A6NHX0 329 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 PRPF40AO75400 957 aaKnown RBP14.8□□□□□ -0.04
SHMT2-228ENST00000557302 RHOBTB3O94955 611 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 GARTP22102 1010 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 HOXD13P35453 343 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 PPP2R3AQ06190 1150 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 CAMK1Q14012 370 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 KCNB1Q14721 858 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 NAB2Q15742 525 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 ENOX2Q16206 610 aaKnown RBP14.8□□□□□ -0.04
SHMT2-228ENST00000557302 BMT2Q1RMZ1 405 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 SLC10A6Q3KNW5 377 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 ARMCX5Q6P1M9 558 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 NELFCDQ8IXH7 590 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 KIAA0895Q8NCT3 520 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 MICAL1Q8TDZ2 1067 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 BCL7CQ8WUZ0 217 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-228ENST00000557302 GBP4Q96PP9 640 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 COLEC11Q9BWP8 271 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 NSUN3Q9H649 340 aaKnown RBP14.8□□□□□ -0.04
SHMT2-228ENST00000557302 SLC38A7Q9NVC3 462 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 STK39Q9UEW8 545 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 CPSF3Q9UKF6 684 aaKnown RBP14.8□□□□□ -0.04
SHMT2-228ENST00000557302 CUL9Q8IWT3 2517 aa14.8□□□□□ -0.04
SHMT2-228ENST00000557302 TTC26A0AVF1 554 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 KIAA0391O15091 583 aaKnown RBP14.79□□□□□ -0.04
SHMT2-228ENST00000557302 MEFVO15553 781 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-228ENST00000557302 SMC2O95347 1197 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 ACOT2P49753 483 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 SNRPFP62306 86 aaKnown RBP14.79□□□□□ -0.04
SHMT2-228ENST00000557302 PDE12Q6L8Q7 609 aaKnown RBP14.79□□□□□ -0.04
SHMT2-228ENST00000557302 HS2ST1Q7LGA3 356 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 DDX53Q86TM3 631 aaKnown RBP14.79□□□□□ -0.04
SHMT2-228ENST00000557302 CD302Q8IX05 232 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 PPP2R3CQ969Q6 453 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 ZMAT2Q96NC0 199 aaKnown RBP14.79□□□□□ -0.04
SHMT2-228ENST00000557302 CBWD1Q9BRT8 395 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 ENTPD7Q9NQZ7 604 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 RMND1Q9NWS8 449 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 MARCH5Q9NX47 278 aa14.79□□□□□ -0.04
SHMT2-228ENST00000557302 MYO7AQ13402 2215 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 LACTBL1A8MY62 500 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 FSCN2O14926 492 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 KIF20AO95235 890 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 LDHAP00338 332 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 IRS1P35568 1242 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 ERVFC1P60507 584 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 POU5F1Q01860 360 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 HSP90AA2PQ14568 343 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 BMS1Q14692 1282 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 SKIV2LQ15477 1246 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 KNOP1Q1ED39 458 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 TMC7Q7Z402 723 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 ELOA2Q8IYF1 753 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 VPS52Q8N1B4 723 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 RABGGTAQ92696 567 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms