RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TISP43B9A030 160 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 FSCN2O14926 492 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 KLRC4O43908 158 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 PRPF6O94906 941 aaKnown RBP23.69■■□□□ 1.38
CLN3-207ENST00000395653 ERVFC1P60507 584 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 POSTNQ15063 836 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 TCEAL5Q5H9L2 206 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 GLRA4Q5JXX5 417 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 KANK3Q6NY19 840 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 EPM2AIP1Q7L775 607 aaPredicted RBP23.69■■□□□ 1.38
CLN3-207ENST00000395653 SYCP3Q8IZU3 236 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 FMR1NBQ8N0W7 255 aaPredicted RBP23.69■■□□□ 1.38
CLN3-207ENST00000395653 GLIS3Q8NEA6 775 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 PLEKHA5Q9HAU0 1116 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 UBE4BO95155 1302 aa23.69■■□□□ 1.38
CLN3-207ENST00000395653 MEFVO15553 781 aaPredicted RBP23.68■■□□□ 1.38
CLN3-207ENST00000395653 CSPG5O95196 566 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 KCNE1P15382 129 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 FAM160A1Q05DH4 1040 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 SLC10A6Q3KNW5 377 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 TMEM87AQ8NBN3 555 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 MICAL1Q8TDZ2 1067 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 PPP2R3CQ969Q6 453 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 TCF25Q9BQ70 676 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 COLEC11Q9BWP8 271 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 IKZF4Q9H2S9 585 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 NGRNQ9NPE2 291 aaKnown RBP23.68■■□□□ 1.38
CLN3-207ENST00000395653 SLC38A7Q9NVC3 462 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 REV3LO60673 3130 aa23.68■■□□□ 1.38
CLN3-207ENST00000395653 CXCL8P10145 99 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 ADSSP30520 456 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 SNW1Q13573 536 aaKnown RBP23.67■■□□□ 1.38
CLN3-207ENST00000395653 ENGASEQ8NFI3 743 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 ZNF507Q8TCN5 953 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 POMGNT1Q8WZA1 660 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 IPO9Q96P70 1041 aaKnown RBP23.67■■□□□ 1.38
CLN3-207ENST00000395653 ENTPD7Q9NQZ7 604 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 TSHZ2Q9NRE2 1034 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 EXOC1Q9NV70 894 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 CPSF3Q9UKF6 684 aaKnown RBP23.67■■□□□ 1.38
CLN3-207ENST00000395653 AGO2Q9UKV8 859 aaKnown RBP23.67■■□□□ 1.38
CLN3-207ENST00000395653 CITO14578 2027 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 CASTOR2A6NHX0 329 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 TNFSF9P41273 254 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 PSMD2Q13200 908 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 SKIV2LQ15477 1246 aaKnown RBP23.67■■□□□ 1.38
CLN3-207ENST00000395653 ZBTB41Q5SVQ8 909 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 TMC7Q7Z402 723 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 VPS52Q8N1B4 723 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 ZMAT2Q96NC0 199 aaKnown RBP23.67■■□□□ 1.38
CLN3-207ENST00000395653 ZBP1Q9H171 429 aa23.67■■□□□ 1.38
CLN3-207ENST00000395653 PRUNE2Q8WUY3 3088 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 TTC26A0AVF1 554 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 ADRB2P07550 413 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 PRR29P0C7W0 189 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 GARTP22102 1010 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 POU5F1Q01860 360 aaKnown RBP23.66■■□□□ 1.38
CLN3-207ENST00000395653 PPP2R3AQ06190 1150 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 DPYDQ12882 1025 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 HSP90AA2PQ14568 343 aaPredicted RBP23.66■■□□□ 1.38
CLN3-207ENST00000395653 BMS1Q14692 1282 aaKnown RBP23.66■■□□□ 1.38
CLN3-207ENST00000395653 ENOX2Q16206 610 aaKnown RBP23.66■■□□□ 1.38
CLN3-207ENST00000395653 BMT2Q1RMZ1 405 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 KMT5BQ4FZB7 885 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 PLPP4Q5VZY2 271 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 SCFD1Q8WVM8 642 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 UROC1Q96N76 676 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 PAAF1Q9BRP4 392 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 VN1R3Q9BXE9 311 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 RPF1Q9H9Y2 349 aaKnown RBP23.66■■□□□ 1.38
CLN3-207ENST00000395653 SLC39A2Q9NP94 309 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 PCDHGC5Q9Y5F6 944 aa23.66■■□□□ 1.38
CLN3-207ENST00000395653 EFEMP2O95967 443 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 RPN1P04843 607 aaKnown RBP23.65■■□□□ 1.38
CLN3-207ENST00000395653 HOXD13P35453 343 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 SMC1AQ14683 1233 aaKnown RBP23.65■■□□□ 1.38
CLN3-207ENST00000395653 COL19A1Q14993 1142 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 RNF168Q8IYW5 571 aaPredicted RBP23.65■■□□□ 1.38
CLN3-207ENST00000395653 CCDC47Q96A33 483 aaKnown RBP23.65■■□□□ 1.38
CLN3-207ENST00000395653 TIGD1Q96MW7 591 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 TSPAN18Q96SJ8 248 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 ADAM28Q9UKQ2 775 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 COG5Q9UP83 839 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.65■■□□□ 1.38
CLN3-207ENST00000395653 MYO7AQ13402 2215 aa23.65■■□□□ 1.38
CLN3-207ENST00000395653 F8W810 466 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 NCK2O43639 380 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 LDHAP00338 332 aaKnown RBP23.64■■□□□ 1.37
CLN3-207ENST00000395653 SOD2P04179 222 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 CTSAP10619 480 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 ACOT2P49753 483 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 HYAL1Q12794 435 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 ADGRD2Q7Z7M1 963 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 CD302Q8IX05 232 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 PRDM6Q9NQX0 595 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 CACNG4Q9UBN1 327 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 IRAK3Q9Y616 596 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 TRIP11Q15643 1979 aa23.64■■□□□ 1.37
CLN3-207ENST00000395653 TMEM189-UBE2V1I3L0A0 370 aa23.63■■□□□ 1.37
CLN3-207ENST00000395653 KIAA0391O15091 583 aaKnown RBP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms