RNA–Protein interactions for RNA: ENST00000630907.2

UBE3A-222, Transcript of ubiquitin protein ligase E3A, human

TSL 5

Gene UBE3A, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE3A-222	ENST00000630907	PDXK	O00764	312 aa		28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	CLTA	P09496	248 aa		28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	BMP6	P22004	513 aa		28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	NOMO2	Q5JPE7	1267 aa		28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	URGCP	Q8TCY9	931 aa		28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	PCIF1	Q9H4Z3	704 aa		28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	YBX2	Q9Y2T7	364 aa	Known RBP	28.38	■■■□□ 2.13
UBE3A-222	ENST00000630907	LCHN	A4D1U4	455 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	ARL5C	A6NH57	179 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	KIAA0391	O15091	583 aa	Known RBP	28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	FAM189A1	O60320	539 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	MLH1	P40692	756 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	PPP1R2	P41236	205 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	STIM1	Q13586	685 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	KLHL40	Q2TBA0	621 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	ZBTB41	Q5SVQ8	909 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	ADSSL1	Q8N142	457 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	FIBCD1	Q8N539	461 aa		28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	SYAP1	Q96A49	352 aa	Predicted RBP	28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	TOPORS	Q9NS56	1045 aa	Predicted RBP	28.37	■■■□□ 2.13
UBE3A-222	ENST00000630907	CLIC2	O15247	247 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	INPPL1	O15357	1258 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	CALU	O43852	315 aa	Predicted RBP	28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	LDHA	P00338	332 aa	Known RBP	28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	CA3	P07451	260 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	TNFSF9	P41273	254 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	ACOT2	P49753	483 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	CAVIN1	Q6NZI2	390 aa	Known RBP	28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	RBM43	Q6ZSC3	357 aa	Known RBP	28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	C12orf56	Q8IXR9	622 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	SAAL1	Q96ER3	474 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	ZFP42	Q96MM3	310 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	RPS6KC1	Q96S38	1066 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	MRPL9	Q9BYD2	267 aa	Known RBP	28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	NKX2-4	Q9H2Z4	354 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	HSPBP1	Q9NZL4	362 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	TMEM63C	Q9P1W3	806 aa		28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	CPSF3	Q9UKF6	684 aa	Known RBP	28.36	■■■□□ 2.13
UBE3A-222	ENST00000630907	DNAJB2	P25686	324 aa		28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	AFF1	P51825	1210 aa	Known RBP	28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	SKOR2	Q2VWA4	1001 aa	Predicted RBP	28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	LRRC43	Q8N309	656 aa		28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	FAM213A	Q9BRX8	229 aa		28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	RPF1	Q9H9Y2	349 aa	Known RBP	28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	KANSL3	Q9P2N6	904 aa		28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	TRAF3IP3	Q9Y228	551 aa		28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	COL4A6	Q14031	1691 aa		28.35	■■■□□ 2.13
UBE3A-222	ENST00000630907	GOLGA8IP	A6NC78	632 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	GOLGA8J	A6NMD2	632 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	PPP1R3G	B7ZBB8	358 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	EXTL3	O43909	919 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	CD44	P16070	742 aa	Known RBP	28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	CYP2J2	P51589	502 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	NFKBIB	Q15653	356 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	SLC10A6	Q3KNW5	377 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	HABP4	Q5JVS0	413 aa	Known RBP	28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	GPD1L	Q8N335	351 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	TIFA	Q96CG3	184 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	DHTKD1	Q96HY7	919 aa	Predicted RBP	28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	SNX27	Q96L92	541 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	SEMA6B	Q9H3T3	888 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	MIOS	Q9NXC5	875 aa		28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	MRPL42	Q9Y6G3	142 aa	Known RBP	28.34	■■■□□ 2.13
UBE3A-222	ENST00000630907	LINC01553	A4QN01	128 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	PSMA7	O14818	248 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	POMC	P01189	267 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	CXCL8	P10145	99 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	SCNN1G	P51170	649 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	CRELD2	Q6UXH1	353 aa	Predicted RBP	28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	ALKAL1	Q6UXT8	129 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	LRRC55	Q6ZSA7	311 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	GSTCD	Q8NEC7	633 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	ZSWIM2	Q8NEG5	633 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	NOC3L	Q8WTT2	800 aa	Known RBP	28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	PLEKHA5	Q9HAU0	1116 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	TBC1D13	Q9NVG8	400 aa		28.33	■■■□□ 2.13
UBE3A-222	ENST00000630907	SOX1	O00570	391 aa	Predicted RBP	28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	POU5F1	Q01860	360 aa	Known RBP	28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	RNASEL	Q05823	741 aa	Known RBP	28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	ENOX2	Q16206	610 aa	Known RBP	28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	XKR4	Q5GH76	650 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	CENPP	Q6IPU0	288 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	SLC9A9	Q8IVB4	645 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	XXYLT1	Q8NBI6	393 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	P2RX5	Q93086	422 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	TSG101	Q99816	390 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	CXCL16	Q9H2A7	254 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	SLC28A3	Q9HAS3	691 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	KIAA1586	Q9HCI6	787 aa		28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	28.32	■■■□□ 2.12
UBE3A-222	ENST00000630907	MEFV	O15553	781 aa	Predicted RBP	28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	ARHGEF15	O94989	841 aa		28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	NR3C1	P04150	777 aa		28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	NLRP12	P59046	1061 aa		28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	MYBPC2	Q14324	1141 aa		28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	HSP90AA2P	Q14568	343 aa	Predicted RBP	28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	NFIL3	Q16649	462 aa		28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	ZCWPW2	Q504Y3	356 aa		28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	SPOUT1	Q5T280	376 aa	Known RBP	28.31	■■■□□ 2.12
UBE3A-222	ENST00000630907	PPP2R2D	Q66LE6	453 aa		28.31	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms