RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CEP120Q8N960 986 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 GOLGA5Q8TBA6 731 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 ACAP3Q96P50 834 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 IKZF4Q9H2S9 585 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 KIAA1468Q9P260 1216 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 CGNQ9P2M7 1197 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 KANSL3Q9P2N6 904 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 MAN1B1Q9UKM7 699 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 AGO2Q9UKV8 859 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 TRIP11Q15643 1979 aa20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 TDRD15B5MCY1 1934 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 TISP43B9A030 160 aa20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 MLH1P40692 756 aa20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 SPOUT1Q5T280 376 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 GUF1Q8N442 669 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 GAD1Q99259 594 aa20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 HAPLN2Q9GZV7 340 aa20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 KLK14Q9P0G3 267 aa20.85■□□□□ 0.93
SQSTM1-216ENST00000626660 LINC01553A4QN01 128 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 ARL5CA6NH57 179 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 KIAA0391O15091 583 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 ADSSP30520 456 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 RNASELQ05823 741 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 STIM1Q13586 685 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 AGPAT3Q9NRZ7 376 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 MAPK8IP1Q9UQF2 711 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 RWDD3Q9Y3V2 267 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 NLRC5Q86WI3 1866 aa20.84■□□□□ 0.93
SQSTM1-216ENST00000626660 TMEM265A0A087WTH1 108 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 BIN1O00499 593 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 INPPL1O15357 1258 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 LDHAP00338 332 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 HSP90AA2PQ14568 343 aaPredicted RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 SEZ6Q53EL9 994 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 ISM2Q6H9L7 571 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 SMYD4Q8IYR2 804 aaPredicted RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 TRIML1Q8N9V2 468 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 ZFP42Q96MM3 310 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 SAMD11Q96NU1 681 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 TGS1Q96RS0 853 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 CBWD1Q9BRT8 395 aa20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 RPF1Q9H9Y2 349 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 TYW1Q9NV66 732 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 MRPL42Q9Y6G3 142 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-216ENST00000626660 RALGAPA2Q2PPJ7 1873 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 PDXKO00764 312 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 TGFB1I1O43294 461 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 PPP1R2P41236 205 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 SCNN1GP51170 649 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 TAP1Q03518 808 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 MORC3Q14149 939 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 COBLL1Q53SF7 1204 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 Q7L0L9 218 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 TMEM192Q8IY95 271 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 NOC3LQ8WTT2 800 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 FAM193BQ96PV7 902 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 PCIF1Q9H4Z3 704 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 AAASQ9NRG9 546 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 TBC1D13Q9NVG8 400 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 STXBP5LQ9Y2K9 1186 aa20.82■□□□□ 0.92
SQSTM1-216ENST00000626660 CLIC2O15247 247 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 CALUO43852 315 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 POMCP01189 267 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 PPP2R3AQ06190 1150 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 GRIK3Q13003 919 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 ZNF697Q5TEC3 545 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 GPD1LQ8N335 351 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 CLP1Q92989 425 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 SYAP1Q96A49 352 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 SAAL1Q96ER3 474 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 SNX27Q96L92 541 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 KCTD10Q9H3F6 313 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 PLEKHA5Q9HAU0 1116 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 KIAA1586Q9HCI6 787 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 HSPBP1Q9NZL4 362 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 CPSF3Q9UKF6 684 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 KIAA1671Q9BY89 1806 aa20.81■□□□□ 0.92
SQSTM1-216ENST00000626660 CARNS1A5YM72 827 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 EXTL3O43909 919 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 FAM189A1O60320 539 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 THP07101 528 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 CXCL8P10145 99 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 LAG3P18627 525 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 CTNNB1P35222 781 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 TNFSF9P41273 254 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 PRCPP42785 496 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 ACOT2P49753 483 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 CYP2J2P51589 502 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 POU5F1Q01860 360 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 ZBTB41Q5SVQ8 909 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 CCDC183Q5T5S1 534 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 C12orf56Q8IXR9 622 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 FAM213AQ9BRX8 229 aa20.8■□□□□ 0.92
SQSTM1-216ENST00000626660 COL6A3P12111 3177 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 LAMA3Q16787 3333 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 GOLGA8IPA6NC78 632 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 GOLGA8JA6NMD2 632 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 PSMA7O14818 248 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ZC3H11AO75152 810 aaKnown RBP eCLIP20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ARHGEF15O94989 841 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms