RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 Q6YL49 198 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 NOP9Q86U38 636 aaKnown RBP5.02□□□□□ -1.61
VPS13A-213ENST00000539950 PLXDC1Q8IUK5 500 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 ARHGEF19Q8IW93 802 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 FBXO18Q8NFZ0 1043 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 TSPEARQ8WU66 669 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 TGFBRAP1Q8WUH2 860 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 ACAP3Q96P50 834 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 TOR3AQ9H497 397 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 CYP4F11Q9HBI6 524 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 DIRC3C9JPN6 131 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 NUDT3O95989 172 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 RBP3P10745 1247 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 MGAT1P26572 445 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 ADSLP30566 484 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 PTPN7P35236 360 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 FLT3LGP49771 235 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 Q6ZVL8 140 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 PDZD4Q76G19 769 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 TRMT2AQ8IZ69 625 aaKnown RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 CPEB3Q8NE35 698 aaKnown RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 RIN2Q8WYP3 895 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 RAX2Q96IS3 184 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 ADAM2Q99965 735 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 QRSL1Q9H0R6 528 aaKnown RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 VTA1Q9NP79 307 aa5.01□□□□□ -1.61
VPS13A-213ENST00000539950 APOBEC2Q9Y235 224 aaKnown RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 USP15Q9Y4E8 981 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-213ENST00000539950 PNPLA7Q6ZV29 1317 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 DRGXA6NNA5 263 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 CXorf49A8MYA2 514 aaPredicted RBP5□□□□□ -1.61
VPS13A-213ENST00000539950 AKR1B10O60218 316 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 PHF2O75151 1096 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 BMPR1AP36894 532 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 CHN2P52757 468 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 TP53BP2Q13625 1128 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 FAM47AQ5JRC9 791 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 DPY19L2P1Q6NXN4 242 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 OLFML1Q6UWY5 402 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 ZNF572Q7Z3I7 529 aaPredicted RBP5□□□□□ -1.61
VPS13A-213ENST00000539950 CMTR2Q8IYT2 770 aaKnown RBP5□□□□□ -1.61
VPS13A-213ENST00000539950 ZFP28Q8NHY6 868 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 LMBR1Q8WVP7 490 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 PAWRQ96IZ0 340 aaKnown RBP5□□□□□ -1.61
VPS13A-213ENST00000539950 PHACTR3Q96KR7 559 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 SYBUQ9NX95 663 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 MAP3K2Q9Y2U5 619 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 PCSK5Q92824 1860 aa5□□□□□ -1.61
VPS13A-213ENST00000539950 MARCH11A6NNE9 402 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 GOLGA8AA7E2F4 631 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 DDX6P26196 483 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS13A-213ENST00000539950 USP14P54578 494 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 MRPS9P82933 396 aaKnown RBP4.99□□□□□ -1.61
VPS13A-213ENST00000539950 GUCY1B3Q02153 619 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 TAP1Q03518 808 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 KCNK18Q7Z418 384 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 GPR156Q8NFN8 814 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 AUTS2Q8WXX7 1259 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 RIOX1Q9H6W3 641 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 SYNPO2LQ9H987 977 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 ZNHIT2Q9UHR6 403 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 SCOCQ9UIL1 159 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 ATRNL1Q5VV63 1379 aa4.99□□□□□ -1.61
VPS13A-213ENST00000539950 PJA2O43164 708 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 SPDEFO95238 335 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 SPATA31D3P0C874 917 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 ALOX15P16050 662 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-213ENST00000539950 SCAND1P57086 179 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 CLRN1P58418 232 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 ADRM1Q16186 407 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 MUM1Q2TAK8 710 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 TAF7LQ5H9L4 462 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 ATXN7L2Q5T6C5 722 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-213ENST00000539950 AGAP9Q5VTM2 703 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 SPATA31D4Q6ZUB0 917 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 LCORLQ8N3X6 602 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 SUPT20HQ8NEM7 779 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 OR7D4Q8NG98 312 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 ASB10Q8WXI3 467 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 ORAI2Q96SN7 254 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 CAAP1Q9H8G2 361 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 BCO1Q9HAY6 547 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 IFT122Q9HBG6 1241 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 DMRT3Q9NQL9 472 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 EPN1Q9Y6I3 576 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-213ENST00000539950 FPGT-TNNI3KV9GXZ4 949 aa4.98□□□□□ -1.61
VPS13A-213ENST00000539950 TLDC2A0PJX2 215 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 PIPSLA2A3N6 862 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 ZAR1LA6NP61 321 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 KIAA0355O15063 1070 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 CFIP05156 583 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 ELANEP08246 267 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 ECHS1P30084 290 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 SOX5P35711 763 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 SREBF1P36956 1147 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 CLK3P49761 638 aaKnown RBP4.97□□□□□ -1.61
VPS13A-213ENST00000539950 RAP2BP61225 183 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 SRSF2Q01130 221 aaKnown RBP4.97□□□□□ -1.61
VPS13A-213ENST00000539950 PPP3CAQ08209 521 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 FOXI1Q12951 378 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms