RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 FAM47AQ5JRC9 791 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 EFCAB12Q6NXP0 572 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 PDZD4Q76G19 769 aaPredicted RBP4.41□□□□□ -1.7
CPSF3-205ENST00000489629 HDGFL2Q7Z4V5 671 aaPredicted RBP4.41□□□□□ -1.7
CPSF3-205ENST00000489629 PLXDC1Q8IUK5 500 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 CMIPQ8IY22 773 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 RNF169Q8NCN4 708 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 SLC35B2Q8TB61 432 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 TFAP2CQ92754 450 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 RAX2Q96IS3 184 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 ORAI2Q96SN7 254 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 TTC1Q99614 292 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 ADAM2Q99965 735 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 WDR11Q9BZH6 1224 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 SCOCQ9UIL1 159 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 ATRNL1Q5VV63 1379 aa4.4□□□□□ -1.7
CPSF3-205ENST00000489629 CXorf49A8MYA2 514 aaPredicted RBP4.4□□□□□ -1.71
CPSF3-205ENST00000489629 PJA2O43164 708 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 PHF2O75151 1096 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 PPFIA2O75334 1257 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 CDK17Q00537 523 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 STRN3Q13033 797 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 Q6ZVL8 140 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 ZNF572Q7Z3I7 529 aaPredicted RBP4.4□□□□□ -1.71
CPSF3-205ENST00000489629 KCNK18Q7Z418 384 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 PRIMA1Q86XR5 153 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 TRMT2AQ8IZ69 625 aaKnown RBP4.4□□□□□ -1.71
CPSF3-205ENST00000489629 UBR7Q8N806 425 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 REPS2Q8NFH8 660 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 GPR156Q8NFN8 814 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 LMBR1Q8WVP7 490 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 RIN2Q8WYP3 895 aaPredicted RBP4.4□□□□□ -1.71
CPSF3-205ENST00000489629 LINC00476Q8WZB0 136 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 POGKQ9P215 609 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 PNPLA7Q6ZV29 1317 aa4.4□□□□□ -1.71
CPSF3-205ENST00000489629 TLDC2A0PJX2 215 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 PIPSLA2A3N6 862 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 DRGXA6NNA5 263 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 ADRM1Q16186 407 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 DPY19L2P1Q6NXN4 242 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 OLFML1Q6UWY5 402 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 AFAP1L2Q8N4X5 818 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 CPEB3Q8NE35 698 aaKnown RBP4.39□□□□□ -1.71
CPSF3-205ENST00000489629 OR7D4Q8NG98 312 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 ZFP28Q8NHY6 868 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 HOXB13Q92826 284 aaPredicted RBP4.39□□□□□ -1.71
CPSF3-205ENST00000489629 CAAP1Q9H8G2 361 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 BCO1Q9HAY6 547 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 CYP4F11Q9HBI6 524 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 VTA1Q9NP79 307 aa4.39□□□□□ -1.71
CPSF3-205ENST00000489629 EPN1Q9Y6I3 576 aaPredicted RBP4.39□□□□□ -1.71
CPSF3-205ENST00000489629 AKR1B10O60218 316 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 NUDT3O95989 172 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 SPATA31D3P0C874 917 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 ALOX15P16050 662 aaPredicted RBP4.38□□□□□ -1.71
CPSF3-205ENST00000489629 FBLP22087 321 aaKnown RBP4.38□□□□□ -1.71
CPSF3-205ENST00000489629 ADSLP30566 484 aaPredicted RBP4.38□□□□□ -1.71
CPSF3-205ENST00000489629 SREBF1P36956 1147 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 CHN2P52757 468 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 CLRN1P58418 232 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 PPP3CAQ08209 521 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 TP53BP2Q13625 1128 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 MUM1Q2TAK8 710 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 AGAP9Q5VTM2 703 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 SPATA31D4Q6ZUB0 917 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 NPM2Q86SE8 214 aaKnown RBP4.38□□□□□ -1.71
CPSF3-205ENST00000489629 AUTS2Q8WXX7 1259 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 FATE1Q969F0 183 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 COQ10AQ96MF6 247 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 QRSL1Q9H0R6 528 aaKnown RBP4.38□□□□□ -1.71
CPSF3-205ENST00000489629 IFT122Q9HBG6 1241 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 MAP3K2Q9Y2U5 619 aa4.38□□□□□ -1.71
CPSF3-205ENST00000489629 USP15Q9Y4E8 981 aaPredicted RBP4.38□□□□□ -1.71
CPSF3-205ENST00000489629 UNC119BA6NIH7 251 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 GOLGA8AA7E2F4 631 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 BRINP1O60477 761 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 EYA4O95677 639 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 CFIP05156 583 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 ELANEP08246 267 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 SNRPA1P09661 255 aaKnown RBP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 EGR2P11161 476 aaPredicted RBP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 TYRP1P17643 537 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 DDX6P26196 483 aaKnown RBP eCLIP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 PTPN7P35236 360 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 MASP1P48740 699 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 CLK3P49761 638 aaKnown RBP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 USP14P54578 494 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 CCT2P78371 535 aaKnown RBP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 GUCY1B3Q02153 619 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 SCAPQ12770 1279 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 FOXI1Q12951 378 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 SP140Q13342 867 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 TAF7LQ5H9L4 462 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 ATXN7L2Q5T6C5 722 aaPredicted RBP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 RHOT2Q8IXI1 618 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 NTN5Q8WTR8 489 aaPredicted RBP4.37□□□□□ -1.71
CPSF3-205ENST00000489629 TGFBRAP1Q8WUH2 860 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 ASB10Q8WXI3 467 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 PRDM13Q9H4Q3 707 aa4.37□□□□□ -1.71
CPSF3-205ENST00000489629 GREM2Q9H772 168 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms