RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 NXF1Q9UBU9 619 aaKnown RBP18.53■□□□□ 0.56
SYNE3-204ENST00000555759 SLC26A4O43511 780 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 USP17L8P0C7I0 530 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 SLC16A2P36021 539 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 NLRP11P59045 1033 aaKnown RBP18.53■□□□□ 0.56
SYNE3-204ENST00000555759 MIS18BP1Q6P0N0 1132 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 MYLK4Q86YV6 388 aaPredicted RBP18.53■□□□□ 0.56
SYNE3-204ENST00000555759 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.53■□□□□ 0.562e-6■■■■■ 54.9
SYNE3-204ENST00000555759 AS3MTQ9HBK9 375 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 OLFML3Q9NRN5 406 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 ETAA1Q9NY74 926 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 IGKV5-2P06315 115 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 DDX42Q86XP3 938 aaKnown RBP eCLIP18.53■□□□□ 0.56
SYNE3-204ENST00000555759 RCOR2Q8IZ40 523 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 CCNL1Q9UK58 526 aaPredicted RBP18.53■□□□□ 0.56
SYNE3-204ENST00000555759 PAX7P23759 505 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 SERPINB1P30740 379 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 CA8P35219 290 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 WASHC2DQ5SRD0 308 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 SYDE2Q5VT97 1194 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 PHF20Q9BVI0 1012 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 PLAGL2Q9UPG8 496 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 NEU2Q9Y3R4 380 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 AP4S1Q9Y587 144 aa18.53■□□□□ 0.56
SYNE3-204ENST00000555759 USP17L3A6NCW0 530 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 USP17L4A6NCW7 530 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 RSPH10B2B2RC85 870 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 M0QZ92 97 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 RSPH10BP0C881 870 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 BMP3P12645 472 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 DEFA1P59665 94 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 DEFA3P59666 94 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 SKOR1P84550 965 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 MAP3K10Q02779 954 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 USP17L1Q7RTZ2 530 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 C4orf33Q8N1A6 199 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 SNRNP27Q8WVK2 155 aaKnown RBP18.52■□□□□ 0.56
SYNE3-204ENST00000555759 PAWRQ96IZ0 340 aaKnown RBP18.52■□□□□ 0.56
SYNE3-204ENST00000555759 DACH2Q96NX9 599 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 MANSC1Q9H8J5 431 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 PRAMEF22A3QJZ6 481 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 PP2D1A8MPX8 630 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 POTECB2RU33 542 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 MAP2K7O14733 419 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 UCHL3P15374 230 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 TARSP26639 723 aaKnown RBP18.52■□□□□ 0.56
SYNE3-204ENST00000555759 DLGAP5Q15398 846 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 TRADDQ15628 312 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 CCNYL1Q8N7R7 359 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 PPP1R3GB7ZBB8 358 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 P3H1Q32P28 736 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 PREPLQ4J6C6 727 aaPredicted RBP18.52■□□□□ 0.56
SYNE3-204ENST00000555759 EPHA10Q5JZY3 1008 aa18.52■□□□□ 0.56
SYNE3-204ENST00000555759 ALG13Q9NP73 1137 aaKnown RBP18.52■□□□□ 0.56
SYNE3-204ENST00000555759 DDX20Q9UHI6 824 aaKnown RBP18.52■□□□□ 0.56
SYNE3-204ENST00000555759 ORAI2Q96SN7 254 aa18.52■□□□□ 0.55
SYNE3-204ENST00000555759 RXFP1Q9HBX9 757 aa18.52■□□□□ 0.55
SYNE3-204ENST00000555759 PARVAQ9NVD7 372 aa18.52■□□□□ 0.55
SYNE3-204ENST00000555759 PPME1Q9Y570 386 aa18.52■□□□□ 0.55
SYNE3-204ENST00000555759 XDHP47989 1333 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 DAB2P98082 770 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 ZNF746Q6NUN9 644 aaPredicted RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 LVRNQ6Q4G3 990 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 TERB1Q8NA31 727 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 CHMP2BQ9UQN3 213 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 SRRM3A6NNA2 597 aaPredicted RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 SPDYE16A6NNV3 312 aaPredicted RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 SASH3O75995 380 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 MAGEA4P43358 317 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 SPDYE2Q495Y8 402 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 PSPC1Q8WXF1 523 aaKnown RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 OPTNQ96CV9 577 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 NGRNQ9NPE2 291 aaKnown RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 SLC9A2Q9UBY0 812 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 SFI1A8K8P3 1242 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 HSPA1AP0DMV8 641 aaKnown RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 HSPA1BP0DMV9 641 aaKnown RBP18.51■□□□□ 0.55
SYNE3-204ENST00000555759 FNTAP49354 379 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 CENPCQ03188 943 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 FIGNQ5HY92 759 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 C9orf72Q96LT7 481 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 AIPL1Q9NZN9 384 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 DTNAQ9Y4J8 743 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 EDRF1Q3B7T1 1238 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 ARL13BQ3SXY8 428 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 MIEF2Q96C03 454 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 GGA2Q9UJY4 613 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 ITGB1BP2Q9UKP3 347 aa18.51■□□□□ 0.55
SYNE3-204ENST00000555759 GFAPP14136 432 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 OSBPP22059 807 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 ALDH1B1P30837 517 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 CDK8P49336 464 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 MAP3K7CLP57077 242 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 TRIM16LQ309B1 348 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 TTC8Q8TAM2 541 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 DYNLL2Q96FJ2 89 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 CATSPER2Q96P56 530 aa18.5■□□□□ 0.55
SYNE3-204ENST00000555759 MRPL1Q9BYD6 325 aaKnown RBP18.5■□□□□ 0.55
SYNE3-204ENST00000555759 EML4Q9HC35 981 aaKnown RBP18.5■□□□□ 0.55
SYNE3-204ENST00000555759 PHTF1Q9UMS5 762 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms