RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CCDC113Q9H0I3 377 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 AGPAT5Q9NUQ2 364 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 EVPLQ92817 2033 aa11.29□□□□□ -0.6
SKA1-204ENST00000488454 ZBBXA8MT70 800 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 BIN1O00499 593 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 ENPP3O14638 875 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 N4BP3O15049 544 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 EIF3DO15371 548 aaKnown RBP eCLIP11.28□□□□□ -0.6
SKA1-204ENST00000488454 BAIAP3O94812 1187 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 PRPF6O94906 941 aaKnown RBP11.28□□□□□ -0.6
SKA1-204ENST00000488454 LETM1O95202 739 aaPredicted RBP11.28□□□□□ -0.6
SKA1-204ENST00000488454 ARF4P18085 180 aaPredicted RBP11.28□□□□□ -0.6
SKA1-204ENST00000488454 KCNJ6P48051 423 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 EHHADHQ08426 723 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 STK4Q13043 487 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 STIM1Q13586 685 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 AMHR2Q16671 573 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 TMEM240Q5SV17 173 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 NT5DC1Q5TFE4 455 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 ZNF658Q5TYW1 1059 aaPredicted RBP11.28□□□□□ -0.6
SKA1-204ENST00000488454 ATF7IP2Q5U623 682 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 ISM2Q6H9L7 571 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 CAVIN1Q6NZI2 390 aaKnown RBP11.28□□□□□ -0.6
SKA1-204ENST00000488454 ZPBP2Q6X784 338 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 OTOP2Q7RTS6 562 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 HACE1Q8IYU2 909 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 MYOCDQ8IZQ8 938 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 TRIML1Q8N9V2 468 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 SPATA20Q8TB22 786 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 ZNF507Q8TCN5 953 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 CPB2Q96IY4 423 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 FIZ1Q96SL8 496 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 TARS2Q9BW92 718 aaKnown RBP11.28□□□□□ -0.6
SKA1-204ENST00000488454 TMX1Q9H3N1 280 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 C1orf112Q9NSG2 853 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 MAN1B1Q9UKM7 699 aa11.28□□□□□ -0.6
SKA1-204ENST00000488454 A0A1B0GUA9 196 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 HNRNPDLO14979 420 aaKnown RBP11.27□□□□□ -0.61
SKA1-204ENST00000488454 CLDN3O15551 220 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 B4GALT5O43286 388 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 TOM1L1O75674 476 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 AMHP03971 560 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 CFHP08603 1231 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 IBSPP21815 317 aaPredicted RBP11.27□□□□□ -0.61
SKA1-204ENST00000488454 HOXA11P31270 313 aaPredicted RBP11.27□□□□□ -0.61
SKA1-204ENST00000488454 PPP1R2P41236 205 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 CASP5P51878 434 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 EPHB4P54760 987 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 KNOP1Q1ED39 458 aaKnown RBP11.27□□□□□ -0.61
SKA1-204ENST00000488454 TJAP1Q5JTD0 557 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 SLFN12LQ6IEE8 588 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 SLC27A1Q6PCB7 646 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 SASS6Q6UVJ0 657 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 SLC24A5Q71RS6 500 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 C16orf59Q7L2K0 433 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 HS2ST1Q7LGA3 356 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 TAS1R3Q7RTX0 852 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 MAP4K3Q8IVH8 894 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 NELFCDQ8IXH7 590 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 SCFD1Q8WVM8 642 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 ACO2Q99798 780 aaKnown RBP11.27□□□□□ -0.61
SKA1-204ENST00000488454 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.27□□□□□ -0.612e-6■■■■□ 23.3
SKA1-204ENST00000488454 PRR14Q9BWN1 585 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 STRA6Q9BX79 667 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 RGS18Q9NS28 235 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 LRFN2Q9ULH4 789 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 TNFSF13BQ9Y275 285 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 USP20Q9Y2K6 914 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 PCDHB7Q9Y5E2 793 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 ARID2Q68CP9 1835 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 UBE4BO95155 1302 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 CNTNAP2Q9UHC6 1331 aa11.27□□□□□ -0.61
SKA1-204ENST00000488454 A0A0U1RQF3 1178 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 MGEA5O60502 916 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 STAG3L1P0CL83 205 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 RAB27AP51159 221 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 SNRPFP62306 86 aaKnown RBP11.26□□□□□ -0.61
SKA1-204ENST00000488454 KCNC4Q03721 635 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 MORC3Q14149 939 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 DSC3Q14574 896 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 DCAF4L1Q3SXM0 396 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 ZNF568Q3ZCX4 644 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 MPZL3Q6UWV2 235 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 EPM2AIP1Q7L775 607 aaPredicted RBP11.26□□□□□ -0.61
SKA1-204ENST00000488454 ZBTB33Q86T24 672 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 GUF1Q8N442 669 aaKnown RBP11.26□□□□□ -0.61
SKA1-204ENST00000488454 KIAA0895Q8NCT3 520 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 GLIS3Q8NEA6 775 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 GOLGA5Q8TBA6 731 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 HERVK_113Q902F9 699 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 PGBD4Q96DM1 585 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 GDF15Q99988 308 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 FGFBP2Q9BYJ0 223 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 GBP3Q9H0R5 595 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 PDZD7Q9H5P4 517 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 FAM105AQ9NUU6 356 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 CGNQ9P2M7 1197 aaKnown RBP11.26□□□□□ -0.61
SKA1-204ENST00000488454 ANKFY1Q9P2R3 1169 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 MAPK8IP1Q9UQF2 711 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 GDAQ9Y2T3 454 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms