RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 IFI16Q16666 785 aaKnown RBP3□□□□□ -1.93
MCF2-204ENST00000414978 TSHZ3Q63HK5 1081 aa3□□□□□ -1.93
MCF2-204ENST00000414978 ESRP1Q6NXG1 681 aaKnown RBP3□□□□□ -1.93
MCF2-204ENST00000414978 FAM180BQ6P0A1 224 aa3□□□□□ -1.93
MCF2-204ENST00000414978 NPNTQ6UXI9 565 aa3□□□□□ -1.93
MCF2-204ENST00000414978 ARHGAP27Q6ZUM4 889 aa3□□□□□ -1.93
MCF2-204ENST00000414978 KRT78Q8N1N4 520 aa3□□□□□ -1.93
MCF2-204ENST00000414978 KCNH5Q8NCM2 988 aa3□□□□□ -1.93
MCF2-204ENST00000414978 RILPL2Q969X0 211 aa3□□□□□ -1.93
MCF2-204ENST00000414978 C18orf8Q96DM3 657 aa3□□□□□ -1.93
MCF2-204ENST00000414978 LRRC46Q96FV0 321 aa3□□□□□ -1.93
MCF2-204ENST00000414978 SORBS1Q9BX66 1292 aaKnown RBP3□□□□□ -1.93
MCF2-204ENST00000414978 BCAS3Q9H6U6 928 aa3□□□□□ -1.93
MCF2-204ENST00000414978 LRRC4CQ9HCJ2 640 aa3□□□□□ -1.93
MCF2-204ENST00000414978 PRDM5Q9NQX1 630 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 PLSCR4Q9NRQ2 329 aa3□□□□□ -1.93
MCF2-204ENST00000414978 PNMA8BQ9ULN7 279 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 STXBP5LQ9Y2K9 1186 aa3□□□□□ -1.93
MCF2-204ENST00000414978 CD163L1Q9NR16 1453 aa3□□□□□ -1.93
MCF2-204ENST00000414978 A0A1W2PQJ5 194 aa3□□□□□ -1.93
MCF2-204ENST00000414978 TCRBV5S4A2TA0A5A2 114 aa3□□□□□ -1.93
MCF2-204ENST00000414978 SLC12A8A0AV02 714 aa3□□□□□ -1.93
MCF2-204ENST00000414978 PI4K2BG5E9Z4 385 aa3□□□□□ -1.93
MCF2-204ENST00000414978 H3BUI4 141 aa3□□□□□ -1.93
MCF2-204ENST00000414978 DVL2O14641 736 aa3□□□□□ -1.93
MCF2-204ENST00000414978 TBC1D8O95759 1140 aa3□□□□□ -1.93
MCF2-204ENST00000414978 GCP02774 474 aa3□□□□□ -1.93
MCF2-204ENST00000414978 EPXP11678 715 aa3□□□□□ -1.93
MCF2-204ENST00000414978 ATP1A3P13637 1013 aa3□□□□□ -1.93
MCF2-204ENST00000414978 IREB2P48200 963 aaKnown RBP3□□□□□ -1.93
MCF2-204ENST00000414978 ZNF143P52747 638 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 GPR85P60893 370 aa3□□□□□ -1.93
MCF2-204ENST00000414978 ATAT1Q5SQI0 421 aa3□□□□□ -1.93
MCF2-204ENST00000414978 MZT2BQ6NZ67 158 aa3□□□□□ -1.93
MCF2-204ENST00000414978 CC2D1AQ6P1N0 951 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 CYP26C1Q6V0L0 522 aa3□□□□□ -1.93
MCF2-204ENST00000414978 RTL10Q7L3V2 364 aa3□□□□□ -1.93
MCF2-204ENST00000414978 OVCH1Q7RTY7 1134 aa3□□□□□ -1.93
MCF2-204ENST00000414978 SIAH1Q8IUQ4 282 aa3□□□□□ -1.93
MCF2-204ENST00000414978 SHISA5Q8N114 240 aa3□□□□□ -1.93
MCF2-204ENST00000414978 STON2Q8WXE9 905 aa3□□□□□ -1.93
MCF2-204ENST00000414978 BORCS6Q96GS4 357 aa3□□□□□ -1.93
MCF2-204ENST00000414978 ITM2CQ9NQX7 267 aa3□□□□□ -1.93
MCF2-204ENST00000414978 A0A1W2PQ27 194 aa3□□□□□ -1.93
MCF2-204ENST00000414978 A0A1W2PQ64 194 aa3□□□□□ -1.93
MCF2-204ENST00000414978 A0A1W2PQC6 194 aa3□□□□□ -1.93
MCF2-204ENST00000414978 A0A1W2PQD8 194 aa3□□□□□ -1.93
MCF2-204ENST00000414978 WTIPA6NIX2 430 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 C22orf46C9J442 243 aa3□□□□□ -1.93
MCF2-204ENST00000414978 ARVCFO00192 962 aa3□□□□□ -1.93
MCF2-204ENST00000414978 FTLP02792 175 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 RPN1P04843 607 aaKnown RBP3□□□□□ -1.93
MCF2-204ENST00000414978 CKMT1AP12532 417 aa3□□□□□ -1.93
MCF2-204ENST00000414978 BMP3P12645 472 aa3□□□□□ -1.93
MCF2-204ENST00000414978 SMARCA1P28370 1054 aa3□□□□□ -1.93
MCF2-204ENST00000414978 MRE11P49959 708 aa3□□□□□ -1.93
MCF2-204ENST00000414978 CASP5P51878 434 aa3□□□□□ -1.93
MCF2-204ENST00000414978 TDGQ13569 410 aa3□□□□□ -1.93
MCF2-204ENST00000414978 TERF2Q15554 542 aa3□□□□□ -1.93
MCF2-204ENST00000414978 C7orf31Q8N865 590 aa3□□□□□ -1.93
MCF2-204ENST00000414978 C2CD4AQ8NCU7 369 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 NEDD1Q8NHV4 660 aa3□□□□□ -1.93
MCF2-204ENST00000414978 CREB3L4Q8TEY5 395 aa3□□□□□ -1.93
MCF2-204ENST00000414978 LMBR1Q8WVP7 490 aa3□□□□□ -1.93
MCF2-204ENST00000414978 COPS5Q92905 334 aa3□□□□□ -1.93
MCF2-204ENST00000414978 SMARCC1Q92922 1105 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 TBATAQ96M53 351 aa3□□□□□ -1.93
MCF2-204ENST00000414978 VRK1Q99986 396 aaPredicted RBP3□□□□□ -1.93
MCF2-204ENST00000414978 MYL10Q9BUA6 226 aa3□□□□□ -1.93
MCF2-204ENST00000414978 FRRS1LQ9P0K9 344 aa3□□□□□ -1.93
MCF2-204ENST00000414978 RBPJLQ9UBG7 517 aa3□□□□□ -1.93
MCF2-204ENST00000414978 FBLN5Q9UBX5 448 aa3□□□□□ -1.93
MCF2-204ENST00000414978 B4GALT6Q9UBX8 382 aa3□□□□□ -1.93
MCF2-204ENST00000414978 PCDHA6Q9UN73 950 aa3□□□□□ -1.93
MCF2-204ENST00000414978 RUVBL1Q9Y265 456 aaKnown RBP3□□□□□ -1.93
MCF2-204ENST00000414978 ERBB4Q15303 1308 aa3□□□□□ -1.93
MCF2-204ENST00000414978 GLTPD2A6NH11 291 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 RRN3P2A6NIE6 340 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 AURKAO14965 403 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 TIPRLO75663 272 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 POLBP06746 335 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 MMEP08473 750 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 PAMP19021 973 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 PDCP20941 246 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 RNF4P78317 190 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 TNK2Q07912 1038 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 CHRNA2Q15822 529 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 GJC2Q5T442 439 aaPredicted RBP2.99□□□□□ -1.93
MCF2-204ENST00000414978 ANGEL2Q5VTE6 544 aaKnown RBP2.99□□□□□ -1.93
MCF2-204ENST00000414978 FAM47EQ6ZV65 393 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 GIMAP8Q8ND71 665 aaPredicted RBP2.99□□□□□ -1.93
MCF2-204ENST00000414978 HIPK4Q8NE63 616 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 SYTL5Q8TDW5 730 aaPredicted RBP2.99□□□□□ -1.93
MCF2-204ENST00000414978 UCMAQ8WVF2 138 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 ZMAT3Q9HA38 289 aaKnown RBP2.99□□□□□ -1.93
MCF2-204ENST00000414978 GPR27Q9NS67 375 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 CWC25Q9NXE8 425 aaPredicted RBP2.99□□□□□ -1.93
MCF2-204ENST00000414978 RNF112Q9ULX5 631 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 RABGAP1Q9Y3P9 1069 aa2.99□□□□□ -1.93
MCF2-204ENST00000414978 NPFFR2Q9Y5X5 522 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms