RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 MAP3K7O43318 606 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 TM4SF1P30408 202 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 KRT17Q04695 432 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 PDIA2Q13087 525 aaKnown RBP11.46□□□□□ -0.57
CCDC40-204ENST00000397545 EPC2Q52LR7 807 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 IZUMO3Q5VZ72 239 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 HAUS6Q7Z4H7 955 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 FAF2Q96CS3 445 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 HDAC11Q96DB2 347 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 CYFIP2Q96F07 1278 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 SLC13A1Q9BZW2 595 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 ZNF277Q9NRM2 450 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-204ENST00000397545 PDS5AQ29RF7 1337 aaKnown RBP11.46□□□□□ -0.57
CCDC40-204ENST00000397545 CCDC195A0A1B0GUA6 201 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 COPEO14579 308 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 RASA1P20936 1047 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 FUT2Q10981 343 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 TTLL6Q8N841 843 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 SPDL1Q96EA4 605 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 AGPAT1Q99943 283 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 MIS12Q9H081 205 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 SLC38A10Q9HBR0 1119 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 LRRC4BQ9NT99 713 aa11.46□□□□□ -0.57
CCDC40-204ENST00000397545 BAZ2AQ9UIF9 1905 aaKnown RBP11.46□□□□□ -0.57
CCDC40-204ENST00000397545 FAM187AA6NFU0 413 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 BYSLQ13895 437 aaKnown RBP11.46□□□□□ -0.58
CCDC40-204ENST00000397545 FRMD5Q7Z6J6 570 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 TMEM35BQ8NCS4 154 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 ZFP69BQ9UJL9 534 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 DIS3Q9Y2L1 958 aaKnown RBP11.46□□□□□ -0.58
CCDC40-204ENST00000397545 A0A0U1RQJ8 604 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 PDXKO00764 312 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 SCP2P22307 547 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 GARSP41250 739 aaKnown RBP11.46□□□□□ -0.58
CCDC40-204ENST00000397545 ARL4CP56559 192 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 KYNUQ16719 465 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 DALRD3Q5D0E6 543 aaKnown RBP11.46□□□□□ -0.58
CCDC40-204ENST00000397545 FAM160B1Q5W0V3 765 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 TRAPPC11Q7Z392 1133 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 ANKMY2Q8IV38 441 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 FAF1Q9UNN5 650 aaPredicted RBP11.46□□□□□ -0.58
CCDC40-204ENST00000397545 MYH2Q9UKX2 1941 aa11.46□□□□□ -0.58
CCDC40-204ENST00000397545 ZSCAN5CA6NGD5 496 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-204ENST00000397545 DCTN3O75935 186 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 SLC4A1P02730 911 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 QARSP47897 775 aaKnown RBP11.45□□□□□ -0.58
CCDC40-204ENST00000397545 RAD23BP54727 409 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 ZNF543Q08ER8 600 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 KRT39Q6A163 491 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 JADE1Q6IE81 842 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 MIS18BP1Q6P0N0 1132 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 SLC17A8Q8NDX2 589 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 DCAF4Q8WV16 495 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 PACSIN1Q9BY11 444 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 IL17RBQ9NRM6 502 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 DIAPH2O60879 1101 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 PFDN1O60925 122 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 PMS1P54277 932 aaKnown RBP11.45□□□□□ -0.58
CCDC40-204ENST00000397545 SPOPLQ6IQ16 392 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 C4orf33Q8N1A6 199 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 CCHCR1Q8TD31 782 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 NLRP7Q8WX94 980 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 SEC16BQ96JE7 1060 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 HSD3B7Q9H2F3 369 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 Q9H521 79 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 ANKZF1Q9H8Y5 726 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 PSD3Q9NYI0 1048 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 NUB1Q9Y5A7 615 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 SCINQ9Y6U3 715 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 IQANK1A0A1B0GTG1 560 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 KRT37O76014 449 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 ARL4AP40617 200 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 CORO7P57737 925 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 MDM2Q00987 491 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-204ENST00000397545 SWSAP1Q6NVH7 229 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 TRIM42Q8IWZ5 723 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 USP38Q8NB14 1042 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 DTX3LQ8TDB6 740 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 ERGIC2Q96RQ1 377 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 GABBR1Q9UBS5 961 aa11.45□□□□□ -0.58
CCDC40-204ENST00000397545 AHDC1Q5TGY3 1603 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-204ENST00000397545 MYCP01106 439 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-204ENST00000397545 PSAPP07602 524 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 USP11P51784 963 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 SLC29A2Q14542 456 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 MUM1L1Q5H9M0 696 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 PDZD4Q76G19 769 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-204ENST00000397545 HDAC7Q8WUI4 952 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 CCDC124Q96CT7 223 aaKnown RBP11.44□□□□□ -0.58
CCDC40-204ENST00000397545 XPO6Q96QU8 1125 aaKnown RBP11.44□□□□□ -0.58
CCDC40-204ENST00000397545 NUDCD1Q96RS6 583 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 KLF6Q99612 283 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-204ENST00000397545 FGFR1OP2Q9NVK5 253 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 TLK1Q9UKI8 766 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 ALG6Q9Y672 507 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 FAM205AQ6ZU69 1335 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 PLCH1Q4KWH8 1693 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 SPECC1L-ADORA2AF8WAN1 911 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 HAUS5O94927 633 aa11.44□□□□□ -0.58
CCDC40-204ENST00000397545 PDHBP11177 359 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms