RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CAPN12Q6ZSI9 719 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 PRUNE1Q86TP1 453 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 ATG4AQ8WYN0 398 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 TMEM237Q96Q45 408 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 CARD9Q9H257 536 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 PFASO15067 1338 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 TMEM253P0C7T8 217 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 VCAM1P19320 739 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 UBXN2AP68543 259 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 PPATQ06203 517 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 KYNUQ16719 465 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 PPP4R3CPQ6ZMV5 832 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 SRRM1Q8IYB3 904 aaKnown RBP19.72■□□□□ 0.75
UPF1-210ENST00000600689 NAP1L3Q99457 506 aaPredicted RBP19.72■□□□□ 0.75
UPF1-210ENST00000600689 EBF2Q9HAK2 575 aa19.72■□□□□ 0.75
UPF1-210ENST00000600689 PHF2O75151 1096 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 FAM13AO94988 1023 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 COPS2P61201 443 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 ZNF543Q08ER8 600 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 ASPRV1Q53RT3 343 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 TAOK1Q7L7X3 1001 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 CDC42EP4Q9H3Q1 356 aaKnown RBP19.71■□□□□ 0.75
UPF1-210ENST00000600689 ETNK1Q9HBU6 452 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 TYW1Q9NV66 732 aaKnown RBP19.71■□□□□ 0.75
UPF1-210ENST00000600689 TRAF3IP3Q9Y228 551 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 PDHA1P08559 390 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 STX2P32856 288 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 CHKAP35790 457 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 PTGIRP43119 386 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 CAPRIN2Q6IMN6 1127 aaKnown RBP19.71■□□□□ 0.75
UPF1-210ENST00000600689 KAT5Q92993 513 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 AKT1S1Q96B36 256 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 UBE2TQ9NPD8 197 aaPredicted RBP19.71■□□□□ 0.75
UPF1-210ENST00000600689 HOMER3Q9NSC5 361 aa19.71■□□□□ 0.75
UPF1-210ENST00000600689 TGFB1I1O43294 461 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 CALCAP01258 141 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 ZNF76P36508 570 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 MSH2P43246 934 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 FMO5P49326 533 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 CALCOCO2Q13137 446 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 MPP2Q14168 576 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 QRICH1Q2TAL8 776 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 SEL1L2Q5TEA6 688 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 P2RX7Q99572 595 aaKnown RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 IGKV6D-41A0A0C4DH26 115 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 TISP43B9A030 160 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 PDXKO00764 312 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 BRAFP15056 766 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 ORC2Q13416 577 aaPredicted RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 TAF11Q15544 211 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 ZNF449Q6P9G9 518 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 SPATA21Q7Z572 469 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 ZBTB10Q96DT7 871 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 L3MBTL3Q96JM7 780 aaPredicted RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 TGS1Q96RS0 853 aaKnown RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 INTS2Q9H0H0 1204 aaKnown RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 A0A0A6YYK5 440 aaPredicted RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 CFAP73A6NFT4 308 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 FAM187AA6NFU0 413 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 TTLL1O95922 423 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 GSTA1P08263 222 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 SPATA31C1P0DKV0 1188 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 UBL4BQ8N7F7 174 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 SLC30A5Q8TAD4 765 aa19.7■□□□□ 0.74
UPF1-210ENST00000600689 METTL14Q9HCE5 456 aaKnown RBP19.7■□□□□ 0.74
UPF1-210ENST00000600689 ZBTB5O15062 677 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 CLDN3O15551 220 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 LACTBP83111 547 aaPredicted RBP19.69■□□□□ 0.74
UPF1-210ENST00000600689 SATB1Q01826 763 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 RBM26Q5T8P6 1007 aaKnown RBP19.69■□□□□ 0.74
UPF1-210ENST00000600689 TEKT1Q969V4 418 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 SH2D3AQ9BRG2 576 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 DNAJC18Q9H819 358 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 COL11A2P13942 1736 aaPredicted RBP19.69■□□□□ 0.74
UPF1-210ENST00000600689 SPAG7O75391 227 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 ALDH1B1P30837 517 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 DHX34Q14147 1143 aaKnown RBP19.69■□□□□ 0.74
UPF1-210ENST00000600689 ZNF268Q14587 947 aaPredicted RBP19.69■□□□□ 0.74
UPF1-210ENST00000600689 ANKRD20A2Q5SQ80 823 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 ANKRD20A1Q5TYW2 823 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 ANKRD20A3Q5VUR7 823 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 PHLDB3Q6NSJ2 640 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 CYP4X1Q8N118 509 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 SPOCK2Q92563 424 aa19.69■□□□□ 0.74
UPF1-210ENST00000600689 PSMC2P35998 433 aaKnown RBP19.68■□□□□ 0.74
UPF1-210ENST00000600689 CRKP46108 304 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 RBM5P52756 815 aaKnown RBP eCLIP19.68■□□□□ 0.74
UPF1-210ENST00000600689 ARHGAP4P98171 946 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 ATP11AP98196 1134 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 DAB2IPQ5VWQ8 1189 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 RPUSD2Q8IZ73 545 aaKnown RBP19.68■□□□□ 0.74
UPF1-210ENST00000600689 SYCP3Q8IZU3 236 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 SPIRE2Q8WWL2 714 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 STK33Q9BYT3 514 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 ADAM22Q9P0K1 906 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 RABGAP1Q9Y3P9 1069 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 EML1O00423 815 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 EXOC3O60645 756 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 SNHG28P0DPA3 235 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 GJC1P36383 396 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms