RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 ATP6V1C1P21283 382 aa17.69■□□□□ 0.42
TPM1-228ENST00000560975 RPL13P26373 211 aaKnown RBP17.69■□□□□ 0.42
TPM1-228ENST00000560975 SLC16A2P36021 539 aa17.69■□□□□ 0.42
TPM1-228ENST00000560975 PTDSS1P48651 473 aaKnown RBP17.69■□□□□ 0.42
TPM1-228ENST00000560975 VPS41P49754 854 aa17.69■□□□□ 0.42
TPM1-228ENST00000560975 TYW1Q9NV66 732 aaKnown RBP17.69■□□□□ 0.42
TPM1-228ENST00000560975 DLGAP2Q9P1A6 1054 aa17.69■□□□□ 0.42
TPM1-228ENST00000560975 C2CD2Q9Y426 696 aa17.69■□□□□ 0.42
TPM1-228ENST00000560975 ATP8B3O60423 1300 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 ROBO3Q96MS0 1386 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L15C9J2P7 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L13C9JLJ4 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L11C9JVI0 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L18D6R9N7 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L22D6RA61 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L17D6RBQ6 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L19D6RCP7 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L20D6RJB6 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 BAG3O95817 575 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 TTLL1O95922 423 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 FTLP02792 175 aaPredicted RBP17.68■□□□□ 0.42
TPM1-228ENST00000560975 ALAS1P13196 640 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 RFC5P40937 340 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L24Q0WX57 530 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 DNAJC3Q13217 504 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 RNF220Q5VTB9 566 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 USP17L6PQ6QN14 398 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 PRUNE1Q86TP1 453 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 CATSPER3Q86XQ3 398 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 FAM186BQ8IYM0 893 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 MAGEB18Q96M61 343 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 RUSC1Q9BVN2 902 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 SNED1Q8TER0 1413 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 ATP5DP30049 168 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 MRPS35P82673 323 aaKnown RBP17.68■□□□□ 0.42
TPM1-228ENST00000560975 CYP4A11Q02928 519 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 CBWD6Q4V339 395 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 CBWD3Q5JTY5 395 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 CBWD5Q5RIA9 395 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 TTBK2Q6IQ55 1244 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 FAM43BQ6ZT52 329 aaPredicted RBP17.68■□□□□ 0.42
TPM1-228ENST00000560975 CADPS2Q86UW7 1296 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 GPR88Q9GZN0 384 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.68■□□□□ 0.42
TPM1-228ENST00000560975 MTUS1Q9ULD2 1270 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 CHKBQ9Y259 395 aa17.68■□□□□ 0.42
TPM1-228ENST00000560975 THAP12O43422 761 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 SPAG7O75391 227 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 CBX6O95503 412 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 ECEL1O95672 775 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 HSPA6P17066 643 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 SKIV2L2P42285 1042 aaKnown RBP17.67■□□□□ 0.42
TPM1-228ENST00000560975 RPS6KA3P51812 740 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 RPS8P62241 208 aaKnown RBP17.67■□□□□ 0.42
TPM1-228ENST00000560975 MUM1Q2TAK8 710 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 TBC1D10AQ9BXI6 508 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 ZNF287Q9HBT7 754 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 FOXN3O00409 490 aaPredicted RBP17.67■□□□□ 0.42
TPM1-228ENST00000560975 IRF6O14896 467 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 COG2Q14746 738 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 CLUL1Q15846 466 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 PPP1R15BQ5SWA1 713 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 RBM26Q5T8P6 1007 aaKnown RBP17.67■□□□□ 0.42
TPM1-228ENST00000560975 ARHGEF18Q6ZSZ5 1173 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 MIGA2Q7L4E1 593 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 EPM2AIP1Q7L775 607 aaPredicted RBP17.67■□□□□ 0.42
TPM1-228ENST00000560975 SLC13A5Q86YT5 568 aaPredicted RBP17.67■□□□□ 0.42
TPM1-228ENST00000560975 UCMAQ8WVF2 138 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 DNAJC9Q8WXX5 260 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 SYT11Q9BT88 431 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 LRMDAQ9H2I8 198 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 SLCO1B3Q9NPD5 702 aa17.67■□□□□ 0.42
TPM1-228ENST00000560975 MIF4GDA9UHW6 222 aaKnown RBP17.66■□□□□ 0.42
TPM1-228ENST00000560975 FMO5P49326 533 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 KRT17Q04695 432 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 KLC1Q07866 573 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 RNF207Q6ZRF8 634 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 SMIM5Q71RC9 77 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 LRRC37BQ96QE4 947 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 DNM3Q9UQ16 869 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 SPOPO43791 374 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 CYP2J2P51589 502 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 POLGP54098 1239 aaPredicted RBP17.66■□□□□ 0.42
TPM1-228ENST00000560975 MKRN3Q13064 507 aaKnown RBP17.66■□□□□ 0.42
TPM1-228ENST00000560975 SF3B3Q15393 1217 aaKnown RBP17.66■□□□□ 0.42
TPM1-228ENST00000560975 CYFIP1Q7L576 1253 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 RHOT2Q8IXI1 618 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 AGGF1Q8N302 714 aaeCLIP17.66■□□□□ 0.42
TPM1-228ENST00000560975 RDH13Q8NBN7 331 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 INTS2Q9H0H0 1204 aaKnown RBP17.66■□□□□ 0.42
TPM1-228ENST00000560975 PSTPIP2Q9H939 334 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 JMJD4Q9H9V9 463 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 ANKIB1Q9P2G1 1089 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 NAALADL1Q9UQQ1 740 aa17.66■□□□□ 0.42
TPM1-228ENST00000560975 UBAP1LF5GYI3 381 aa17.65■□□□□ 0.42
TPM1-228ENST00000560975 CHRNB2P17787 502 aa17.65■□□□□ 0.42
TPM1-228ENST00000560975 POLE2P56282 527 aa17.65■□□□□ 0.42
TPM1-228ENST00000560975 STRN3Q13033 797 aa17.65■□□□□ 0.42
TPM1-228ENST00000560975 PARP6Q2NL67 630 aa17.65■□□□□ 0.42
TPM1-228ENST00000560975 TSNAXIP1Q2TAA8 658 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms