RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FOXB1Q99853 325 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 KCTD10Q9H3F6 313 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 KCND1Q9NSA2 647 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 ZBTB21Q9ULJ3 1066 aa5.41□□□□□ -1.54
VPS29-205ENST00000548539 PRC1O43663 620 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 RFPL1O75677 317 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 PCDH8O95206 1070 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 LGALS4P56470 323 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 CDK17Q00537 523 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 TRIM25Q14258 630 aaKnown RBP5.4□□□□□ -1.54
VPS29-205ENST00000548539 RNF151Q2KHN1 245 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 TMEM240Q5SV17 173 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 CMTR2Q8IYT2 770 aaKnown RBP5.4□□□□□ -1.54
VPS29-205ENST00000548539 PPM1NQ8N819 430 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 TTC8Q8TAM2 541 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 CALML6Q8TD86 181 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 HSPBAP1Q96EW2 488 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 PRRX2Q99811 253 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 DPYSL5Q9BPU6 564 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 TACO1Q9BSH4 297 aaKnown RBP5.4□□□□□ -1.54
VPS29-205ENST00000548539 DPP7Q9UHL4 492 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 USP18Q9UMW8 372 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 ANKRD6Q9Y2G4 727 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 GIT1Q9Y2X7 761 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 GPR45Q9Y5Y3 372 aa5.4□□□□□ -1.54
VPS29-205ENST00000548539 ZRANB2O95218 330 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS29-205ENST00000548539 AGXTP21549 392 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 C5AR1P21730 350 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 HIBADHP31937 336 aaKnown RBP5.39□□□□□ -1.55
VPS29-205ENST00000548539 ECE1P42892 770 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 MTNR1BP49286 362 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 CSRP2Q16527 193 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 ZNF627Q7L945 461 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 KCNK18Q7Z418 384 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 TCEAL8Q8IYN2 117 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 ZNF808Q8N4W9 903 aaPredicted RBP5.39□□□□□ -1.55
VPS29-205ENST00000548539 MAGEB6Q8N7X4 407 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 CAMKK2Q96RR4 588 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 C12orf65Q9H3J6 166 aaKnown RBP5.39□□□□□ -1.55
VPS29-205ENST00000548539 MTG2Q9H4K7 406 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 AURKAIP1Q9NWT8 199 aaPredicted RBP5.39□□□□□ -1.55
VPS29-205ENST00000548539 GALNT8Q9NY28 637 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 MAGEL2Q9UJ55 1249 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 TMPRSS11EQ9UL52 423 aa5.39□□□□□ -1.55
VPS29-205ENST00000548539 REXO2Q9Y3B8 237 aaKnown RBP5.39□□□□□ -1.55
VPS29-205ENST00000548539 PFKMP08237 780 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 RPS19P39019 145 aaKnown RBP5.38□□□□□ -1.55
VPS29-205ENST00000548539 KRT85P78386 507 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 IL13RA1P78552 427 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 PPARAQ07869 468 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 ZMAT1Q5H9K5 638 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 NXNQ6DKJ4 435 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 PCSK4Q6UW60 755 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 KANSL1Q7Z3B3 1105 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 CCDC146Q8IYE0 955 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 WDR48Q8TAF3 677 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 AUTS2Q8WXX7 1259 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 RPGRQ92834 1020 aaKnown RBP5.38□□□□□ -1.55
VPS29-205ENST00000548539 CLIP3Q96DZ5 547 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 RAX2Q96IS3 184 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 PLA2G12BQ9BX93 195 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 OR10A5Q9H207 317 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 ZNF703Q9H7S9 590 aaPredicted RBP5.38□□□□□ -1.55
VPS29-205ENST00000548539 TCF7L1Q9HCS4 588 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 SLC52A1Q9NWF4 448 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 NR2E1Q9Y466 385 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 MYPNQ86TC9 1320 aa5.38□□□□□ -1.55
VPS29-205ENST00000548539 VSTM5A8MXK1 200 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 CUTAO60888 179 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 NDUFS2O75306 463 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 MAP4K4O95819 1239 aaPredicted RBP5.37□□□□□ -1.55
VPS29-205ENST00000548539 IL18BPO95998 194 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 POLD1P28340 1107 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 GNALP38405 381 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 MRPS9P82933 396 aaKnown RBP5.37□□□□□ -1.55
VPS29-205ENST00000548539 KIF23Q02241 960 aaPredicted RBP5.37□□□□□ -1.55
VPS29-205ENST00000548539 MUM1Q2TAK8 710 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 LYSMD2Q8IV50 215 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 ULK2Q8IYT8 1036 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 TSPEARQ8WU66 669 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 TTPALQ9BTX7 342 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 ANLNQ9NQW6 1124 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 TLR9Q9NR96 1032 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 ZNF277Q9NRM2 450 aaPredicted RBP5.37□□□□□ -1.55
VPS29-205ENST00000548539 TUBD1Q9UJT1 453 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 PNMA8BQ9ULN7 279 aaPredicted RBP5.37□□□□□ -1.55
VPS29-205ENST00000548539 NUMBLQ9Y6R0 609 aa5.37□□□□□ -1.55
VPS29-205ENST00000548539 CCDC194A0A1B0GVG4 234 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 GOLGA6CA6NDK9 693 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 GOLGA6BA6NDN3 693 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 KIF3BO15066 747 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 OPHN1O60890 802 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 GOLGA6DP0CG33 693 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 MTHFD2P13995 350 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 BMP5P22003 454 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 APEX1P27695 318 aaKnown RBP5.36□□□□□ -1.55
VPS29-205ENST00000548539 CYP2C19P33261 490 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 ADCY8P40145 1251 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 RRADP55042 308 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 BCAR1P56945 870 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms