RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 SMC3Q9UQE7 1217 aa6.38□□□□□ -1.39
CUX1-208ENST00000485792 INSL6Q9Y581 213 aa6.38□□□□□ -1.39
CUX1-208ENST00000485792 CLIC4Q9Y696 253 aa6.38□□□□□ -1.39
CUX1-208ENST00000485792 NOTCH4Q99466 2003 aa6.38□□□□□ -1.39
CUX1-208ENST00000485792 COL4A3Q01955 1670 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 A0A087WZ62 844 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 F8W810 466 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 ABLIM1O14639 778 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 INPPL1O15357 1258 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 ASAP2O43150 1006 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 DGAT1O75907 488 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 FGFR1P11362 822 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 PDIA4P13667 645 aaKnown RBP6.37□□□□□ -1.39
CUX1-208ENST00000485792 GLRA2P23416 452 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 TMOD1P28289 359 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 HOXA11P31270 313 aaPredicted RBP6.37□□□□□ -1.39
CUX1-208ENST00000485792 TECP42680 631 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 COL19A1Q14993 1142 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 EMC2Q15006 297 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 PCBP1Q15365 356 aaKnown RBP eCLIP6.37□□□□□ -1.39
CUX1-208ENST00000485792 LINC01559Q495D7 138 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 TMEM119Q4V9L6 283 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 NAALADL2Q58DX5 795 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 CLLU1OSQ5K130 101 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 SLC24A5Q71RS6 500 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 OTUD6AQ7L8S5 288 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 CKAP2LQ8IYA6 745 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 ZNF511Q8NB15 262 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 BAP1Q92560 729 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 NACC1Q96RE7 527 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 USP28Q96RU2 1077 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 FDXACB1Q9BRP7 624 aaPredicted RBP6.37□□□□□ -1.39
CUX1-208ENST00000485792 NTPCRQ9BSD7 190 aaKnown RBP6.37□□□□□ -1.39
CUX1-208ENST00000485792 RUSC1Q9BVN2 902 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 VN1R3Q9BXE9 311 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 CHST12Q9NRB3 414 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 LMCD1Q9NZU5 365 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 CACNG4Q9UBN1 327 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 TCEAL9Q9UHQ7 104 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 MSRAQ9UJ68 235 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 FBXO2Q9UK22 296 aaPredicted RBP6.37□□□□□ -1.39
CUX1-208ENST00000485792 NOL7Q9UMY1 257 aaKnown RBP6.37□□□□□ -1.39
CUX1-208ENST00000485792 GREB1Q4ZG55 1949 aa6.37□□□□□ -1.39
CUX1-208ENST00000485792 NPHP3-ACAD11A0A0J9YXS1 232 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 A0A0U1RQF3 1178 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 ZBBXA8MT70 800 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 E9PMD0 336 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 GPR182O15218 404 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 RPS6KA5O75582 802 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 EOMESO95936 686 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 BMP15O95972 392 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 AMHP03971 560 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PBX3P40426 434 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 KCNJ6P48051 423 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 SARSP49591 514 aaKnown RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 WNT7BP56706 349 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PTENP60484 403 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PRR20EP86478 221 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PRR20CP86479 221 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PRR20DP86480 221 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PRR20BP86481 221 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PRR20AP86496 221 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 LAMTOR4Q0VGL1 99 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 MXD4Q14582 209 aaPredicted RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 FAM187BQ17R55 369 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 ODR4Q5SWX8 454 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 CDCA2Q69YH5 1023 aaPredicted RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 SCARA3Q6AZY7 606 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 C1orf186Q6ZWK4 172 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 SRGAP1Q7Z6B7 1085 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 MRPL10Q7Z7H8 261 aaKnown RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 CDR2LQ86X02 465 aaPredicted RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 NPAS4Q8IUM7 802 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 TPH2Q8IWU9 490 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 METTL13Q8N6R0 699 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 TCP11Q8WWU5 503 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PRPF31Q8WWY3 499 aaKnown RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 SLC7A3Q8WY07 619 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 RSPH1Q8WYR4 309 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 CEP170P1Q96L14 293 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 AK8Q96MA6 479 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 HAPLN2Q9GZV7 340 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 ZMYND15Q9H091 742 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 CCDC113Q9H0I3 377 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 FZD8Q9H461 694 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 SUGCTQ9HAC7 445 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 SLC28A3Q9HAS3 691 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 C1orf112Q9NSG2 853 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 TMEM161AQ9NX61 479 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 SUCLA2Q9P2R7 463 aaPredicted RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 LRWD1Q9UFC0 647 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 PLAGL2Q9UPG8 496 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 GPSM3Q9Y4H4 160 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 COL4A3BPQ9Y5P4 624 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 MRPL42Q9Y6G3 142 aaKnown RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 ZNF638Q14966 1978 aaKnown RBP6.36□□□□□ -1.39
CUX1-208ENST00000485792 PTPRDP23468 1912 aa6.36□□□□□ -1.39
CUX1-208ENST00000485792 ZMYM2Q9UBW7 1377 aa6.35□□□□□ -1.39
CUX1-208ENST00000485792 H3BNC9 293 aa6.35□□□□□ -1.39
CUX1-208ENST00000485792 M0QZ92 97 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms