RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 KIZQ2M2Z5 673 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 FAM47CQ5HY64 1035 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 L1TD1Q5T7N2 865 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 CDCA2Q69YH5 1023 aaPredicted RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 KLHL10Q6JEL2 608 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 TAF2Q6P1X5 1199 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 SLC39A4Q6P5W5 647 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 SRGAP1Q7Z6B7 1085 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 FILIP1Q7Z7B0 1213 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 RTN4RL1Q86UN2 441 aaPredicted RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 LUZP1Q86V48 1076 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 ZNF410Q86VK4 478 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 NELFCDQ8IXH7 590 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 FAM126BQ8IXS8 530 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 ZC3H3Q8IXZ2 948 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 SLC17A8Q8NDX2 589 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 DEPTORQ8TB45 409 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 TMEM40Q8WWA1 233 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 NELFBQ8WX92 580 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 BORCS6Q96GS4 357 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 LRCH3Q96II8 777 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 CCDC43Q96MW1 224 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 ACCSQ96QU6 501 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 ACO2Q99798 780 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 TARS2Q9BW92 718 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 SRRTQ9BXP5 876 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 FAM49AQ9H0Q0 323 aaPredicted RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 TMEM206Q9H813 350 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 SAMSN1Q9NSI8 373 aaKnown RBP6.54□□□□□ -1.36
USP39-213ENST00000467885 AKT3Q9Y243 479 aa6.54□□□□□ -1.36
USP39-213ENST00000467885 A0A0B4J269 797 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 A0A1B0GUA9 196 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 TRIM49BA6NDI0 452 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 LRRIQ4A6NIV6 560 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 SMTNL1A8MU46 457 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 H0YCG3 227 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 DPYSL4O14531 572 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 ABLIM1O14639 778 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 PSMA7O14818 248 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 CLIC2O15247 247 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 CKBP12277 381 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 ZNF18P17022 549 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 FGFR4P22455 802 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 PROZP22891 400 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 MRPS6P82932 125 aaKnown RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 RBL2Q08999 1139 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 PAK1Q13153 545 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 ADAM9Q13443 819 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 CAMK2BQ13554 666 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 TFDP1Q14186 410 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 MYBPC2Q14324 1141 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 MBTPS1Q14703 1052 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 NFIL3Q16649 462 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 LRRC26Q2I0M4 334 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 UVSSAQ2YD98 709 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 ZNF618Q5T7W0 954 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 CRELD2Q6UXH1 353 aaPredicted RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 ZPBP2Q6X784 338 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 TSHZ1Q6ZSZ6 1077 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 APTXQ7Z2E3 356 aaKnown RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 NECAB2Q7Z6G3 386 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 SLC9A9Q8IVB4 645 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 MAP4K3Q8IVH8 894 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 C12orf56Q8IXR9 622 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 RNF214Q8ND24 703 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 ZSWIM2Q8NEG5 633 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 FAM200AQ8TCP9 573 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 HVCN1Q96D96 273 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 VWCEQ96DN2 955 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 EEF2KMTQ96G04 330 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 NLRP4Q96MN2 994 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 GCOM2Q9BZD3 368 aaPredicted RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 NAT10Q9H0A0 1025 aaKnown RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 GBP3Q9H0R5 595 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 AGO3Q9H9G7 860 aaKnown RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 DACH1Q9UI36 760 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 NOC2LQ9Y3T9 749 aaKnown RBP6.53□□□□□ -1.36
USP39-213ENST00000467885 CDY2AQ9Y6F7 541 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 SQORQ9Y6N5 450 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 CENPFP49454 3210 aa6.53□□□□□ -1.36
USP39-213ENST00000467885 DOCK5Q9H7D0 1870 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 INO80B-WBP1J3KQ70 363 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 B4GALT5O43286 388 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 KIF20AO95235 890 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 RPLP2P05387 115 aaKnown RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 ARF4P18085 180 aaPredicted RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 ABCD1P33897 745 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 THPOP40225 353 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 PHKA2P46019 1235 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 CASP4P49662 377 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 FAM189BP81408 668 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 FKBP3Q00688 224 aaKnown RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 MYL5Q02045 173 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 LRRC63Q05C16 580 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 STIM1Q13586 685 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 LPIN1Q14693 890 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 MAPK6Q16659 721 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 EDRF1Q3B7T1 1238 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 FBXO47Q5MNV8 452 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 CDKAL1Q5VV42 579 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms