RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NUDT17P0C025 328 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 GTF2A1P52655 376 aaPredicted RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 DRG2P55039 364 aaKnown RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 ACTN3Q08043 901 aaPredicted RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 IFT88Q13099 833 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 ZNF211Q13398 564 aaPredicted RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 JAMLQ86YT9 394 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 DAW1Q8N136 415 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 SLC20A1Q8WUM9 679 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 RAPGEF5Q92565 580 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 VTI1AQ96AJ9 217 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 CNOT10Q9H9A5 744 aaKnown RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 ADARB2Q9NS39 739 aaKnown RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 SEPT11Q9NVA2 429 aaKnown RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 DDX20Q9UHI6 824 aaKnown RBP17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 SYNGAP1Q96PV0 1343 aa17.69■□□□□ 0.42
CLCNKA-203ENST00000439316 MIF4GDA9UHW6 222 aaKnown RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 HIP1RO75146 1068 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 LRRN2O75325 713 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 BCRP11274 1271 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 HSPA6P17066 643 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 COPB2P35606 906 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 USP8P40818 1118 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 SETQ01105 290 aaPredicted RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 RNF187Q5TA31 235 aaPredicted RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 ZDHHC24Q6UX98 284 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 HOOK3Q86VS8 718 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 HOOK2Q96ED9 719 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 LXNQ9BS40 222 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 ZNF577Q9BSK1 485 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 EHMT1Q9H9B1 1298 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 FZD1Q9UP38 647 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 ALG6Q9Y672 507 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 ARHGEF35A5YM69 484 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 KIAA0391O15091 583 aaKnown RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 CTNND1O60716 968 aaKnown RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 PHF2O75151 1096 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 UBXN2AP68543 259 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 IFFO1Q0D2I5 559 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 QPCTQ16769 361 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 DCAF15Q66K64 600 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 ARMC9Q7Z3E5 817 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 ADAT2Q7Z6V5 191 aaKnown RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 SYCP3Q8IZU3 236 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 TMEM174Q8WUU8 243 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 GLG1Q92896 1179 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 CEP89Q96ST8 783 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 TEKT3Q9BXF9 490 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 RANBP17Q9H2T7 1088 aaKnown RBP17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 TMOD4Q9NZQ9 345 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 RASAL2Q9UJF2 1139 aa17.68■□□□□ 0.42
CLCNKA-203ENST00000439316 H0YHG0 523 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 P4HA2O15460 535 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 ARP10275 920 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 KRT13P13646 458 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 PTGIRP43119 386 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 SWT1Q5T5J6 900 aaKnown RBP17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 INTS8Q75QN2 995 aaKnown RBP17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 ARHGEF19Q8IW93 802 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 NEK9Q8TD19 979 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 TATDN2Q93075 761 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 CABS1Q96KC9 395 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 ZSWIM1Q9BR11 485 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 ZNF341Q9BYN7 854 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 PABPC3Q9H361 631 aaKnown RBP17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 EMSYQ7Z589 1322 aa17.67■□□□□ 0.42
CLCNKA-203ENST00000439316 K7ENM7 598 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CHRNA3P32297 505 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 PMS2P54278 862 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 DLG4P78352 724 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 EPC2Q52LR7 807 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CCDC174Q6PII3 467 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 UBL4BQ8N7F7 174 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CENPTQ96BT3 561 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 UBE2TQ9NPD8 197 aaPredicted RBP17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 GRHL1Q9NZI5 618 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CTTNBP2NLQ9P2B4 639 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CAND2O75155 1236 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 FTLP02792 175 aaPredicted RBP17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 MAPTP10636 758 aaKnown RBP17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CTNNA2P26232 953 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 ALCAMQ13740 583 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 BYSLQ13895 437 aaKnown RBP17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 DPY19L2Q6NUT2 758 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 C12orf56Q8IXR9 622 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 CCDC13Q8IYE1 715 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 PRELID2Q8N945 189 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 RDH13Q8NBN7 331 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 KRT35Q92764 455 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 SEC16BQ96JE7 1060 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 RPS6KC1Q96S38 1066 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 ACTR5Q9H9F9 607 aaPredicted RBP17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 PCYOX1Q9UHG3 505 aa17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 MRPL11Q9Y3B7 192 aaKnown RBP17.66■□□□□ 0.42
CLCNKA-203ENST00000439316 DOCK1Q14185 1865 aa17.65■□□□□ 0.42
CLCNKA-203ENST00000439316 MTA2O94776 668 aa17.65■□□□□ 0.42
CLCNKA-203ENST00000439316 GGPS1O95749 300 aa17.65■□□□□ 0.42
CLCNKA-203ENST00000439316 SHBGP04278 402 aa17.65■□□□□ 0.42
CLCNKA-203ENST00000439316 GBP1P32455 592 aa17.65■□□□□ 0.42
CLCNKA-203ENST00000439316 MARCKSL1P49006 195 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms