RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ZSWIM1Q9BR11 485 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 TMEM117Q9H0C3 514 aa12.73□□□□□ -0.37
CD44-209ENST00000433892 AGO4Q9HCK5 861 aaKnown RBP12.73□□□□□ -0.37
CD44-209ENST00000433892 FAM187AA6NFU0 413 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 MIF4GDA9UHW6 222 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 P4HA2O15460 535 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 CYP26A1O43174 497 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 TRAPPC3O43617 180 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 CAND2O75155 1236 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 RTN2O75298 545 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 YWHABP31946 246 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 PTGER2P43116 358 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 MRPS9P82933 396 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 ALCAMQ13740 583 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 DHX34Q14147 1143 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 UGCGQ16739 394 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 RNF187Q5TA31 235 aaPredicted RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 ZDHHC24Q6UX98 284 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 CPNE8Q86YQ8 564 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 CCDC127Q96BQ5 260 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 BTBD6Q96KE9 485 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 KREMEN1Q96MU8 473 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 PAGR1Q9BTK6 254 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 EPB41L4BQ9H329 900 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 EFCC1Q9HA90 598 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 NOCTQ9UK39 431 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 DBR1Q9UK59 544 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 SCAF8Q9UPN6 1271 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 CAPN7Q9Y6W3 813 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 SYNGAP1Q96PV0 1343 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 PFASO15067 1338 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 RPTORQ8N122 1335 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 ATXN2Q99700 1313 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 PHF2O75151 1096 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 ADRB2P07550 413 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 MAPTP10636 758 aaKnown RBP12.72□□□□□ -0.37
CD44-209ENST00000433892 GTF2BQ00403 316 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 MTMR1Q13613 665 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 TTC27Q6P3X3 843 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 CBWD2Q8IUF1 395 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 C12orf56Q8IXR9 622 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 FAM71AQ8IYT1 594 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 CLEC4DQ8WXI8 215 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 ELMO3Q96BJ8 720 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 PSMD1Q99460 953 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 ZNF341Q9BYN7 854 aa12.72□□□□□ -0.37
CD44-209ENST00000433892 TCRBV7S2A1N4TA0A589 114 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 SRRM3A6NNA2 597 aaPredicted RBP12.71□□□□□ -0.37
CD44-209ENST00000433892 MMEP08473 750 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 PYGMP11217 842 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 ALAS1P13196 640 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 EIF2AK2P19525 551 aaKnown RBP12.71□□□□□ -0.37
CD44-209ENST00000433892 PTGIRP43119 386 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 PEX5P50542 639 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 PMS2P54278 862 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 EIF3BP55884 814 aaKnown RBP12.71□□□□□ -0.37
CD44-209ENST00000433892 DGKZQ13574 1117 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 CLUL1Q15846 466 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 QPCTQ16769 361 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 FAM102BQ5T8I3 360 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 SUPT20HQ8NEM7 779 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 MDM1Q8TC05 714 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 RAPGEF5Q92565 580 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 SEMA4DQ92854 862 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 SAAL1Q96ER3 474 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 POP1Q99575 1024 aaKnown RBP12.71□□□□□ -0.37
CD44-209ENST00000433892 KIFC3Q9BVG8 833 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 DEFB129Q9H1M3 183 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 PABPC3Q9H361 631 aaKnown RBP12.71□□□□□ -0.37
CD44-209ENST00000433892 RASAL2Q9UJF2 1139 aa12.71□□□□□ -0.37
CD44-209ENST00000433892 ASTN2O75129 1339 aaPredicted RBP12.71□□□□□ -0.38
CD44-209ENST00000433892 ADSSP30520 456 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 CHRNA3P32297 505 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 RPL21P46778 160 aaKnown RBP12.71□□□□□ -0.38
CD44-209ENST00000433892 RASA3Q14644 834 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 LLGL1Q15334 1064 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 SNRNP35Q16560 246 aaKnown RBP12.71□□□□□ -0.38
CD44-209ENST00000433892 PLA2G4FQ68DD2 849 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 CCDC137Q6PK04 289 aaKnown RBP12.71□□□□□ -0.38
CD44-209ENST00000433892 TMEM174Q8WUU8 243 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 VTI1AQ96AJ9 217 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 RNF25Q96BH1 459 aaPredicted RBP12.71□□□□□ -0.38
CD44-209ENST00000433892 RPS6KC1Q96S38 1066 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 GRHL1Q9NZI5 618 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 DDX20Q9UHI6 824 aaKnown RBP12.71□□□□□ -0.38
CD44-209ENST00000433892 PNMA2Q9UL42 364 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 TRPC6Q9Y210 931 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 PTPN22Q9Y2R2 807 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 UBIAD1Q9Y5Z9 338 aa12.71□□□□□ -0.38
CD44-209ENST00000433892 TLDC2A0PJX2 215 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 SMIM23A6NLE4 172 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 CCDC169A6NNP5 214 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 ANKRD63C9JTQ0 380 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 CTNNA2P26232 953 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 DRG2P55039 364 aaKnown RBP12.7□□□□□ -0.38
CD44-209ENST00000433892 FMO1Q01740 532 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 SLC29A2Q14542 456 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 TCEAL1Q15170 157 aa12.7□□□□□ -0.38
CD44-209ENST00000433892 UBAP2Q5T6F2 1119 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms