RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 FAM228AQ86W67 206 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 FUKQ8N0W3 1084 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 CCDC63Q8NA47 563 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 CCDC197Q8NCU1 140 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 CHMP6Q96FZ7 201 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 CALR3Q96L12 384 aaKnown RBP9.3□□□□□ -0.92
USP40-203ENST00000427112 AGPAT1Q99943 283 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 HERPUD2Q9BSE4 406 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 SLC12A6Q9UHW9 1150 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 ANAPC7Q9UJX3 599 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 BRCA2P51587 3418 aa9.3□□□□□ -0.92
USP40-203ENST00000427112 NFIBO00712 420 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 MMP10P09238 476 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 FERP16591 822 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 GCKP35557 465 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 GABPAQ06546 454 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 SGSM1Q2NKQ1 1148 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 SGO2Q562F6 1265 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 CYP4X1Q8N118 509 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 RFFLQ8WZ73 363 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 ARHGEF2Q92974 986 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 TMEM39BQ9GZU3 492 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 VCPKMTQ9H867 229 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 RAVER2Q9HCJ3 691 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 R3HDM2Q9Y2K5 976 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 TMEM120BA0PK00 339 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 DDX3YO15523 660 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 OSTNP61366 133 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 CALCOCO2Q13137 446 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 XKR9Q5GH70 373 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 C10orf76Q5T2E6 689 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 MIER3Q7Z3K6 550 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 ANKMY2Q8IV38 441 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 SLFN12Q8IYM2 578 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 PLEKHO2Q8TD55 490 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 SEMA4DQ92854 862 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 C11orf70Q9BRQ4 267 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 NUCKS1Q9H1E3 243 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 IPO5O00410 1097 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 ACOT2P49753 483 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 CLK2P49760 499 aaKnown RBP9.29□□□□□ -0.92
USP40-203ENST00000427112 KRT17Q04695 432 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 OVGP1Q12889 678 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 CUL1Q13616 776 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 ISLR2Q6UXK2 745 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 RNF207Q6ZRF8 634 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 FRMD5Q7Z6J6 570 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 TMEM117Q9H0C3 514 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 APEX2Q9UBZ4 518 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 TRPC6Q9Y210 931 aa9.29□□□□□ -0.92
USP40-203ENST00000427112 CYP3A7-CYP3A51PA0A087WV96 503 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ESYT2A0FGR8 921 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 PDXKO00764 312 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 THAP12O43422 761 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 DIAPH2O60879 1101 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 NEFHP12036 1026 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 DRD4P21917 467 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 EEPD1Q7L9B9 569 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ZNF564Q8TBZ8 553 aaPredicted RBP9.28□□□□□ -0.92
USP40-203ENST00000427112 TAS1R2Q8TE23 839 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 NCAPGQ9BPX3 1015 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 SLCO1B3Q9NPD5 702 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 IRAK4Q9NWZ3 460 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ATF5Q9Y2D1 282 aaPredicted RBP9.28□□□□□ -0.92
USP40-203ENST00000427112 DOCK2Q92608 1830 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ADRB2P07550 413 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 TCF4P15884 667 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 UGCGQ16739 394 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 SCARA5Q6ZMJ2 495 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ANKFY1Q9P2R3 1169 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 DCTN4Q9UJW0 460 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 IGF2BP3O00425 579 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP40-203ENST00000427112 KIAA0391O15091 583 aaKnown RBP9.28□□□□□ -0.92
USP40-203ENST00000427112 C21orf2O43822 256 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 MXI1P50539 228 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 BFSP1Q12934 665 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 DNAJC3Q13217 504 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 MDH1BQ5I0G3 518 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ZNF662Q6ZS27 426 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 ACTRT1Q8TDG2 376 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 MICAL1Q8TDZ2 1067 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 TBC1D22AQ8WUA7 517 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 FAM213AQ9BRX8 229 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 CDC42EP4Q9H3Q1 356 aaKnown RBP9.28□□□□□ -0.92
USP40-203ENST00000427112 SERPINA10Q9UK55 444 aa9.28□□□□□ -0.92
USP40-203ENST00000427112 IRS2Q9Y4H2 1338 aa9.27□□□□□ -0.92
USP40-203ENST00000427112 MYH11P35749 1972 aa9.27□□□□□ -0.92
USP40-203ENST00000427112 DCCP43146 1447 aa9.27□□□□□ -0.92
USP40-203ENST00000427112 C2orf71A6NGG8 1288 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 PDHA1P08559 390 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 IL1R1P14778 569 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 CHRNB2P17787 502 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 VAMP7P51809 220 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 MAPK7Q13164 816 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 MPP2Q14168 576 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ZDHHC24Q6UX98 284 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ZNF720Q7Z2F6 126 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 SYCE1Q8N0S2 351 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 GLIS1Q8NBF1 620 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 RAB17Q9H0T7 212 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms