RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ATF7IP2Q5U623 682 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 SLC39A5Q6ZMH5 540 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 GUF1Q8N442 669 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 TRIML1Q8N9V2 468 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 DHX38Q92620 1227 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 ANP32BQ92688 251 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 CELF4Q9BZC1 486 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 KCND2Q9NZV8 630 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 AP5Z1O43299 807 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 AKAP3O75969 853 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 CKBP12277 381 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 TNNI1P19237 187 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 GUCY2FP51841 1108 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 ZNF131P52739 623 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 OTOP2Q7RTS6 562 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 ARMC5Q96C12 935 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 CTAGE1Q96RT6 745 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 DUSP9Q99956 384 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 NXF3Q9H4D5 531 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 PDE11AQ9HCR9 933 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 OLFML3Q9NRN5 406 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 HSPBP1Q9NZL4 362 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 KCNJ18B7U540 433 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 PTMAP06454 111 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 KRT19P08727 400 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 HOXD8P13378 290 aaPredicted RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 ADSSP30520 456 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 PTENP60484 403 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 TFAMQ00059 246 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 NCBP1Q09161 790 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 PAK2Q13177 524 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 BIRC3Q13489 604 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 KCNJ12Q14500 433 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 IQCB1Q15051 598 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 PAN2Q504Q3 1202 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 TAF2Q6P1X5 1199 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SERINC5Q86VE9 423 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 MRPL4Q9BYD3 311 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 IFIH1Q9BYX4 1025 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 CXCL16Q9H2A7 254 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 FRMD4BQ9Y2L6 1034 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 ZNF236Q9UL36 1845 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 LRRN2O75325 713 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 CXCL8P10145 99 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 GCLMP48507 274 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 DLG4P78352 724 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 MBTD1Q05BQ5 628 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 TTI2Q6NXR4 508 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SLC39A4Q6P5W5 647 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 ABHD8Q96I13 439 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 ARHGAP28Q9P2N2 729 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 PRKAG2Q9UGJ0 569 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 AGO2Q9UKV8 859 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 PADI3Q9ULW8 664 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SMIM35A0A1B0GVV1 85 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 BICDL2A1A5D9 508 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 FRMD3A2A2Y4 597 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SMTNL1A8MU46 457 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 ESPNB1AK53 854 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 CALUO43852 315 aaPredicted RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 CABYRO75952 493 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 KIF20AO95235 890 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 UBASH3AP57075 661 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 FKBP3Q00688 224 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 PSMD2Q13200 908 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 NCAPHQ15003 741 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SPATA1Q5VX52 437 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 FAM186BQ8IYM0 893 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 DBF4BQ8NFT6 615 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 ZFP42Q96MM3 310 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 NAP1L5Q96NT1 182 aaPredicted RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 ADAM2Q99965 735 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 NOC4LQ9BVI4 516 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 XPO4Q9C0E2 1151 aaKnown RBP10.05□□□□□ -0.8
USP4-202ENST00000351842 RNF39Q9H2S5 420 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SNTG2Q9NY99 539 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SEL1LQ9UBV2 794 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 RWDD2AQ9UIY3 292 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 EXOC7Q9UPT5 735 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 PHF24Q9UPV7 400 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 SCN10AQ9Y5Y9 1956 aa10.05□□□□□ -0.8
USP4-202ENST00000351842 ZMYM2Q9UBW7 1377 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 IGKV6-21A0A0C4DH24 114 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 TEX33O43247 280 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 GPR32O75388 356 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 ADCY5O95622 1261 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 DARSP14868 501 aaKnown RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 CSF2RAP15509 400 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 ZSCAN20P17040 1043 aaPredicted RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 CST5P28325 142 aaPredicted RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 KLK7P49862 253 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 MNX1P50219 401 aaPredicted RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 AFF1P51825 1210 aaKnown RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 NCKAP1LP55160 1127 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 EHHADHQ08426 723 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 FAM228AQ86W67 206 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 DHTKD1Q96HY7 919 aaPredicted RBP10.04□□□□□ -0.8
USP4-202ENST00000351842 ADPGKQ9BRR6 497 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 HAPLN2Q9GZV7 340 aa10.04□□□□□ -0.8
USP4-202ENST00000351842 KCTD10Q9H3F6 313 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms