RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	OR14A2	Q96R54	314 aa		4.19	□□□□□ -1.74
CNOT1-223	ENST00000628857	GPR20	Q99678	358 aa		4.19	□□□□□ -1.74
CNOT1-223	ENST00000628857	TCF25	Q9BQ70	676 aa		4.19	□□□□□ -1.74
CNOT1-223	ENST00000628857	KCTD10	Q9H3F6	313 aa		4.19	□□□□□ -1.74
CNOT1-223	ENST00000628857	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.19	□□□□□ -1.74
CNOT1-223	ENST00000628857	SLC5A4	Q9NY91	659 aa		4.19	□□□□□ -1.74
CNOT1-223	ENST00000628857	KRTAP23-1	A1A580	65 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	UBE2QL1	A1L167	161 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	LCHN	A4D1U4	455 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	ALDH1A2	O94788	518 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	PRKD3	O94806	890 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	CDK11B	P21127	795 aa	Known RBP	4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	SLC5A3	P53794	718 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	NPEPPS	P55786	919 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	LGALS4	P56470	323 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	AMPD3	Q01432	767 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	PPARA	Q07869	468 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	KLF1	Q13351	362 aa	Predicted RBP	4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	CDSN	Q15517	529 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	ZXDC	Q2QGD7	858 aa	Predicted RBP	4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	MUM1	Q2TAK8	710 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	INAVA	Q3KP66	663 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	CT83	Q5H943	113 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	KRT40	Q6A162	431 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	BTNL9	Q6UXG8	535 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	ZNF662	Q6ZS27	426 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	LHFPL2	Q6ZUX7	228 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	HTR3D	Q70Z44	454 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	SNX33	Q8WV41	574 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	MIEF2	Q96C03	454 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	RPL10L	Q96L21	214 aa	Known RBP	4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	ST6GALNAC2	Q9UJ37	374 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	RCAN3	Q9UKA8	241 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	SPEF1	Q9Y4P9	236 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	WASHC2A	Q641Q2	1341 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	RPTOR	Q8N122	1335 aa		4.18	□□□□□ -1.74
CNOT1-223	ENST00000628857	MFAP3L	O75121	409 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	CFB	P00751	764 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	CLEC2L	P0C7M8	214 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	GYPE	P15421	78 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	ACO1	P21399	889 aa	Known RBP	4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	CRHR1	P34998	444 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	MSX2	P35548	267 aa	Predicted RBP	4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	MRPL49	Q13405	166 aa	Known RBP	4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	UBE3C	Q15386	1083 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	NAIF1	Q69YI7	327 aa	Predicted RBP	4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	D2HGDH	Q8N465	521 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	VTA1	Q9NP79	307 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	ZNF277	Q9NRM2	450 aa	Predicted RBP	4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	C14orf119	Q9NWQ9	140 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	SCOC	Q9UIL1	159 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	CLCA2	Q9UQC9	943 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	SHROOM4	Q9ULL8	1493 aa		4.17	□□□□□ -1.74
CNOT1-223	ENST00000628857	LOC105371045	A0A1W2PR82	267 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	HOXA3	O43365	443 aa	Predicted RBP	4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	IPO13	O94829	963 aa	Known RBP	4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	PEX11B	O96011	259 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	LPL	P06858	475 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	CTSS	P25774	331 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	ACRV1	P26436	265 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	WAS	P42768	502 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	MTNR1B	P49286	362 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	SCAND1	P57086	179 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	KRTAP10-2	P60368	255 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	MGAT5	Q09328	741 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	DCAF17	Q5H9S7	520 aa	Predicted RBP	4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	FKBP15	Q5T1M5	1219 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	DOK3	Q7L591	496 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	GPR156	Q8NFN8	814 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	ZNF512	Q96ME7	567 aa	Predicted RBP	4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	ADO	Q96SZ5	270 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	FAM126A	Q9BYI3	521 aa	Predicted RBP	4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	KRTAP9-3	Q9BYQ3	159 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	PRDM12	Q9H4Q4	367 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	GREM2	Q9H772	168 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	IFT122	Q9HBG6	1241 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	PCDH12	Q9NPG4	1184 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	ING3	Q9NXR8	418 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	GIT1	Q9Y2X7	761 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	SH3BP1	Q9Y3L3	701 aa		4.16	□□□□□ -1.74
CNOT1-223	ENST00000628857	TMEM127	O75204	238 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	HMGB1	P09429	215 aa	Known RBP	4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	IBSP	P21815	317 aa	Predicted RBP	4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	HIBADH	P31937	336 aa	Known RBP	4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	GZMK	P49863	264 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	DUSP2	Q05923	314 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	ADRM1	Q16186	407 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	MUM1L1	Q5H9M0	696 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	SYDE2	Q5VT97	1194 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	SPTY2D1	Q68D10	685 aa	Predicted RBP	4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	ZNF585A	Q6P3V2	769 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	PDZD4	Q76G19	769 aa	Predicted RBP	4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	SGMS1	Q86VZ5	419 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	GSPT2	Q8IYD1	628 aa	Known RBP	4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	CNTD1	Q8N815	330 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	MDGA1	Q8NFP4	955 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	TSPEAR	Q8WU66	669 aa		4.15	□□□□□ -1.75
CNOT1-223	ENST00000628857	RBM12	Q9NTZ6	932 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms