RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ARF4P18085 180 aaPredicted RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 PROZP22891 400 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 RFC2P35250 354 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 PHKA2P46019 1235 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 CDC42EP1Q00587 391 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 AMPD3Q01432 767 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 DMP1Q13316 513 aaPredicted RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 MORC3Q14149 939 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 BMT2Q1RMZ1 405 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 FAM26FQ5R3K3 315 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 TMEM240Q5SV17 173 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 KANK3Q6NY19 840 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 DEFB128Q7Z7B8 93 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 MAP4K3Q8IVH8 894 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 MED15Q96RN5 788 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.24□□□□□ -0.774e-6■■■□□ 14.6
VPS35-211ENST00000569950 GCOM2Q9BZD3 368 aaPredicted RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 LRRC27Q9C0I9 530 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 KMT5AQ9NQR1 393 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 AGPAT5Q9NUQ2 364 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 CXXC1Q9P0U4 656 aaPredicted RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 LARSQ9P2J5 1176 aaKnown RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 MAN1B1Q9UKM7 699 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 GDAQ9Y2T3 454 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 PHLPP2Q6ZVD8 1323 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 CNTNAP2Q9UHC6 1331 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 A0A1B0GUA9 196 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 CCDC169A6NNP5 214 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 ANKRD63C9JTQ0 380 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 ACKR2O00590 384 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 TGFB1I1O43294 461 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 RPS6KA5O75582 802 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 PRKCBP05771 671 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 KRT18P05783 430 aaKnown RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 CD44P16070 742 aaKnown RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 ADSSP30520 456 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 FPGSQ05932 587 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 TFDP1Q14186 410 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 PPP2R5AQ15172 486 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 KLHL40Q2TBA0 621 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 HERC4Q5GLZ8 1057 aaPredicted RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 C9orf50Q5SZB4 431 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 CDR2LQ86X02 465 aaPredicted RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 FAM178BQ8IXR5 827 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 CCDC65Q8IXS2 484 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 SMYD4Q8IYR2 804 aaPredicted RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 USP38Q8NB14 1042 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 ZSWIM2Q8NEG5 633 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 ZNF507Q8TCN5 953 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 CPB2Q96IY4 423 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 ZBTB45Q96K62 511 aaPredicted RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 IFT74Q96LB3 600 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 TARS2Q9BW92 718 aaKnown RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 TRAIPQ9BWF2 469 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 IFIH1Q9BYX4 1025 aaKnown RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 C2orf40Q9H1Z8 148 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 TSPYL2Q9H2G4 693 aaPredicted RBP10.23□□□□□ -0.77
VPS35-211ENST00000569950 PDZD7Q9H5P4 517 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 SLC39A2Q9NP94 309 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 RNF19AQ9NV58 838 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 KIAA1468Q9P260 1216 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 TBX20Q9UMR3 447 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 CDH23Q9H251 3354 aa10.23□□□□□ -0.77
VPS35-211ENST00000569950 MEIS3P2A8K0S8 358 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 C9IYK1 514 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 GOLGA6L22H0YM25 854 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 INO80B-WBP1J3KQ70 363 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 K7ENM7 598 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 ENPP3O14638 875 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 PRPF6O94906 941 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 PARNO95453 639 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 MBD3O95983 291 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 EFNA5P52803 228 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 FAM189BP81408 668 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 ZCWPW2Q504Y3 356 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 COBLL1Q53SF7 1204 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 L1TD1Q5T7N2 865 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 CNKSR3Q6P9H4 555 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS35-211ENST00000569950 ZNF365Q70YC5 407 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 ZNF598Q86UK7 904 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 TMEM199Q8N511 208 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 SMG8Q8ND04 991 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 DEPTORQ8TB45 409 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 PRIMPOLQ96LW4 560 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 GSDMAQ96QA5 445 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 ACO2Q99798 780 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 EIF2AQ9BY44 585 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 INO80BQ9C086 356 aaPredicted RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 NUP62CLQ9H1M0 184 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 CXCL16Q9H2A7 254 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 KCTD10Q9H3F6 313 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 ZHX3Q9H4I2 956 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 MRPL44Q9H9J2 332 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 RC3H2Q9HBD1 1191 aaKnown RBP10.22□□□□□ -0.77
VPS35-211ENST00000569950 NR2E3Q9Y5X4 410 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 STYXL1Q9Y6J8 313 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 SZT2Q5T011 3432 aa10.22□□□□□ -0.77
VPS35-211ENST00000569950 TDRD15B5MCY1 1934 aaKnown RBP10.21□□□□□ -0.77
VPS35-211ENST00000569950 PPP1R3GB7ZBB8 358 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms