RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 RNASELQ05823 741 aaKnown RBP20.71■□□□□ 0.91
CLN3-227ENST00000567495 HYAL1Q12794 435 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 BMS1Q14692 1282 aaKnown RBP20.71■□□□□ 0.91
CLN3-227ENST00000567495 AMHR2Q16671 573 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 CTC1Q2NKJ3 1217 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 UBXN11Q5T124 520 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 PPP4R3CPQ6ZMV5 832 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 LPPQ93052 612 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 IFT74Q96LB3 600 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 AK8Q96MA6 479 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 NT5C3AQ9H0P0 336 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 RSAD1Q9HA92 442 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 NGRNQ9NPE2 291 aaKnown RBP20.71■□□□□ 0.91
CLN3-227ENST00000567495 PRMT7Q9NVM4 692 aaPredicted RBP20.71■□□□□ 0.91
CLN3-227ENST00000567495 HCSTQ9UBK5 93 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 FAM50BQ9Y247 325 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 MYO7AQ13402 2215 aa20.71■□□□□ 0.91
CLN3-227ENST00000567495 NCOR1O75376 2440 aa20.7■□□□□ 0.91
CLN3-227ENST00000567495 ARF4P18085 180 aaPredicted RBP20.7■□□□□ 0.9
CLN3-227ENST00000567495 EFNA5P52803 228 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 FAM187BQ17R55 369 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 AGMOQ6ZNB7 445 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 DEPTORQ8TB45 409 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 CDCA3Q99618 268 aaPredicted RBP20.7■□□□□ 0.9
CLN3-227ENST00000567495 TRIM6Q9C030 488 aaPredicted RBP20.7■□□□□ 0.9
CLN3-227ENST00000567495 TBC1D13Q9NVG8 400 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 CLDND1Q9NY35 253 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 STK39Q9UEW8 545 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 GTF3C3Q9Y5Q9 886 aa20.7■□□□□ 0.9
CLN3-227ENST00000567495 NLRC5Q86WI3 1866 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 A0A1B0GUA9 196 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 VPS37CA5D8V6 355 aaPredicted RBP20.69■□□□□ 0.9
CLN3-227ENST00000567495 VWA3AA6NCI4 1184 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 K7ELQ4 463 aaPredicted RBP20.69■□□□□ 0.9
CLN3-227ENST00000567495 TNFRSF10AO00220 468 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 ITGA4P13612 1032 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 IRS1P35568 1242 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 BCAR1P56945 870 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 MAPK6Q16659 721 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 HYIQ5T013 277 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 EP400NLQ6ZTU2 488 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 SLC39A11Q8N1S5 342 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 EFHBQ8N7U6 833 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 MMTAG2Q9BU76 263 aaKnown RBP20.69■□□□□ 0.9
CLN3-227ENST00000567495 TIPINQ9BVW5 301 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 FZD8Q9H461 694 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 TLE6Q9H808 572 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 INPP5FQ9Y2H2 1132 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 IPPQ9Y573 584 aa20.69■□□□□ 0.9
CLN3-227ENST00000567495 PP2D1A8MPX8 630 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 FSCN2O14926 492 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 CDC25AP30304 524 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 LONRF3Q496Y0 759 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 SLC27A1Q6PCB7 646 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 SMG8Q8ND04 991 aaKnown RBP20.68■□□□□ 0.9
CLN3-227ENST00000567495 SNX21Q969T3 373 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 TMEM169Q96HH4 297 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 CPB2Q96IY4 423 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 CDK5RAP3Q96JB5 506 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 C17orf75Q9HAS0 396 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 KCNG1Q9UIX4 513 aa20.68■□□□□ 0.9
CLN3-227ENST00000567495 REV3LO60673 3130 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 MEIS3P2A8K0S8 358 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 INPPL1O15357 1258 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 ZC3H11AO75152 810 aaKnown RBP eCLIP20.67■□□□□ 0.9
CLN3-227ENST00000567495 CSPG5O95196 566 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 ADAM15Q13444 863 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 BSNDQ8WZ55 320 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 DRC1Q96MC2 740 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 FAM193BQ96PV7 902 aaPredicted RBP20.67■□□□□ 0.9
CLN3-227ENST00000567495 TCF25Q9BQ70 676 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 EIF2AQ9BY44 585 aaKnown RBP20.67■□□□□ 0.9
CLN3-227ENST00000567495 IGFLR1Q9H665 355 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 KCND2Q9NZV8 630 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 GIT1Q9Y2X7 761 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 PHLPP2Q6ZVD8 1323 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 XIRP2A4UGR9 3374 aa20.67■□□□□ 0.9
CLN3-227ENST00000567495 FNDC1Q4ZHG4 1894 aaPredicted RBP20.67■□□□□ 0.9
CLN3-227ENST00000567495 E9PMD0 336 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 H3BQ06 376 aaPredicted RBP20.66■□□□□ 0.9
CLN3-227ENST00000567495 ACKR2O00590 384 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 N4BP3O15049 544 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 B4GALT5O43286 388 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 GALTP07902 379 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 SYT1P21579 422 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 LTBRP36941 435 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 PBX3P40426 434 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 NRIP1P48552 1158 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 ERVFC1P60507 584 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 PRPF4BQ13523 1007 aaKnown RBP20.66■□□□□ 0.9
CLN3-227ENST00000567495 PTCRAQ6ISU1 281 aaPredicted RBP20.66■□□□□ 0.9
CLN3-227ENST00000567495 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.66■□□□□ 0.9
CLN3-227ENST00000567495 TMEM175Q9BSA9 504 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 NRDE2Q9H7Z3 1164 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 ENTPD7Q9NQZ7 604 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 ZMYM2Q9UBW7 1377 aa20.66■□□□□ 0.9
CLN3-227ENST00000567495 ARID2Q68CP9 1835 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 GRXCR2A6NFK2 248 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 ALDH2P05091 517 aa20.65■□□□□ 0.9
CLN3-227ENST00000567495 PRKCBP05771 671 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms