RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GTF2BQ00403 316 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 KCNB1Q14721 858 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 MAPK6Q16659 721 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 EPM2AIP1Q7L775 607 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 CATSPER4Q7RTX7 472 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 CDR2LQ86X02 465 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 SMYD4Q8IYR2 804 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 LINC01599Q8WXQ3 324 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 KCNN1Q92952 543 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 SMARCE1Q969G3 411 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 CCDC34Q96HJ3 373 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 CPB2Q96IY4 423 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 LBHD1Q9BQE6 289 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 HOOK1Q9UJC3 728 aaKnown RBP14.11□□□□□ -0.15
SHMT2-227ENST00000557269 TBX20Q9UMR3 447 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 GDAQ9Y2T3 454 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 PHLPP2Q6ZVD8 1323 aa14.11□□□□□ -0.15
SHMT2-227ENST00000557269 BIN1O00499 593 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 ACKR2O00590 384 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 SMC2O95347 1197 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 PPIGQ13427 754 aaKnown RBP eCLIP14.1□□□□□ -0.153e-10■□□□□ 10.6
SHMT2-227ENST00000557269 DSC3Q14574 896 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 FAM187BQ17R55 369 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 PPP4R3CPQ6ZMV5 832 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 ZNF365Q70YC5 407 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 SCFD1Q8WVM8 642 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 SEPT8Q92599 483 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 GSDMAQ96QA5 445 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.1□□□□□ -0.152e-16■■□□□ 13.4
SHMT2-227ENST00000557269 TARS2Q9BW92 718 aaKnown RBP14.1□□□□□ -0.15
SHMT2-227ENST00000557269 AGPAT5Q9NUQ2 364 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 PRMT7Q9NVM4 692 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-227ENST00000557269 KIAA1468Q9P260 1216 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 KCNG1Q9UIX4 513 aa14.1□□□□□ -0.15
SHMT2-227ENST00000557269 TISP43B9A030 160 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 ENPP3O14638 875 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 ERLIN2O94905 339 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 PSMD2Q13200 908 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 PRPF4BQ13523 1007 aaKnown RBP14.09□□□□□ -0.15
SHMT2-227ENST00000557269 KLHL40Q2TBA0 621 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 TMEM240Q5SV17 173 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 UBXN11Q5T124 520 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 L1TD1Q5T7N2 865 aaKnown RBP14.09□□□□□ -0.15
SHMT2-227ENST00000557269 EEF1DP3Q658K8 133 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 CAVIN1Q6NZI2 390 aaKnown RBP14.09□□□□□ -0.15
SHMT2-227ENST00000557269 SLC39A4Q6P5W5 647 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 CNKSR3Q6P9H4 555 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.09□□□□□ -0.154e-7■□□□□ 9.3
SHMT2-227ENST00000557269 OTOP2Q7RTS6 562 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 RPUSD2Q8IZ73 545 aaKnown RBP14.09□□□□□ -0.15
SHMT2-227ENST00000557269 ZNF507Q8TCN5 953 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 ACO2Q99798 780 aaKnown RBP14.09□□□□□ -0.15
SHMT2-227ENST00000557269 MAPK8IP1Q9UQF2 711 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 PIN4Q9Y237 131 aaKnown RBP14.09□□□□□ -0.15
SHMT2-227ENST00000557269 CNTNAP2Q9UHC6 1331 aa14.09□□□□□ -0.15
SHMT2-227ENST00000557269 A0A1B0GUA9 196 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-227ENST00000557269 ANKRD63C9JTQ0 380 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 H0YCG3 227 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 ABLIM1O14639 778 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 FGBP02675 491 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 STRN3Q13033 797 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 MORC3Q14149 939 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 C9orf50Q5SZB4 431 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 CCDC183Q5T5S1 534 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 ATF7IP2Q5U623 682 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 RBM43Q6ZSC3 357 aaKnown RBP14.08□□□□□ -0.16
SHMT2-227ENST00000557269 MAP4K3Q8IVH8 894 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 NELFCDQ8IXH7 590 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 SLC17A8Q8NDX2 589 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 APBB2Q92870 758 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 ZBTB45Q96K62 511 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-227ENST00000557269 PRIMPOLQ96LW4 560 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 ADAM2Q99965 735 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 GDF15Q99988 308 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 EIF2AQ9BY44 585 aaKnown RBP14.08□□□□□ -0.16
SHMT2-227ENST00000557269 MRPL4Q9BYD3 311 aaKnown RBP14.08□□□□□ -0.16
SHMT2-227ENST00000557269 HAPLN2Q9GZV7 340 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 PDZD7Q9H5P4 517 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 PTPRHQ9HD43 1115 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 RMND1Q9NWS8 449 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 PCDHB13Q9Y5F0 798 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 ZMYM2Q9UBW7 1377 aa14.08□□□□□ -0.16
SHMT2-227ENST00000557269 EIF3DO15371 548 aaKnown RBP eCLIP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 PIGRP01833 764 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 PFKMP08237 780 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 CD44P16070 742 aaKnown RBP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 PTMSP20962 102 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 IKBKEQ14164 716 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 PCBP1Q15365 356 aaKnown RBP eCLIP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 BMT2Q1RMZ1 405 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 ZNF658Q5TYW1 1059 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 TMCO2Q7Z6W1 182 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 CCDC47Q96A33 483 aaKnown RBP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 HVCN1Q96D96 273 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 ACCSQ96QU6 501 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 TSPYL2Q9H2G4 693 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-227ENST00000557269 CHST12Q9NRB3 414 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 RGS18Q9NS28 235 aa14.07□□□□□ -0.16
SHMT2-227ENST00000557269 CXXC1Q9P0U4 656 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms