RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 WFS1O76024 890 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 POTEIP0CG38 1075 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 CTNNA2P26232 953 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 HOXD13P35453 343 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 SKIV2L2P42285 1042 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 CCNG1P51959 295 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 MKRN3Q13064 507 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 CCDC38Q502W7 563 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 C11orf63Q6NUN7 778 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 CCDC137Q6PK04 289 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 POTEGQ6S5H5 508 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 POTEEQ6S8J3 1075 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 TRMT10CQ7L0Y3 403 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 CYFIP1Q7L576 1253 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 NBPF5PQ86XG9 351 aaPredicted RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 PRCCQ92733 491 aaPredicted RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 TMOD4Q9NZQ9 345 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 DBR1Q9UK59 544 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 TNFAIP3P21580 790 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 HADHBP55084 474 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 DRAP1Q14919 205 aaPredicted RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 ANKRD20A2Q5SQ80 823 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 SEL1L2Q5TEA6 688 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 ANKRD20A1Q5TYW2 823 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 ANKRD20A3Q5VUR7 823 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 MIS18BP1Q6P0N0 1132 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 C15orf52Q6ZUT6 534 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 ERICH1Q86X53 443 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 SLFN12Q8IYM2 578 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 PRELID2Q8N945 189 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 ERMNQ8TAM6 284 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 MGARPQ8TDB4 240 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 ZNF483Q8TF39 744 aaPredicted RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 ARHGEF26Q96DR7 871 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 NLRP3Q96P20 1036 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 RAB3IPQ96QF0 476 aaPredicted RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 SGIP1Q9BQI5 828 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 REEP2Q9BRK0 252 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 THAP2Q9H0W7 228 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 ARFGEF1Q9Y6D6 1849 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 PFASO15067 1338 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 PASKQ96RG2 1323 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 TMEM120BA0PK00 339 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 PLCG2P16885 1265 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 CASP4P49662 377 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 LRRC14Q15048 493 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 ASRGL1Q7L266 308 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 KIF2BQ8N4N8 673 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 ARHGEF2Q92974 986 aaKnown RBP14.29□□□□□ -0.12
USP40-214ENST00000483519 ART4Q93070 314 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 SERPINB12Q96P63 405 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 SYT11Q9BT88 431 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 RTFDC1Q9BY42 306 aaPredicted RBP14.29□□□□□ -0.12
USP40-214ENST00000483519 GPCPD1Q9NPB8 672 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 SEPT11Q9NVA2 429 aaKnown RBP14.29□□□□□ -0.12
USP40-214ENST00000483519 DNAJC12Q9UKB3 198 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 DNM3Q9UQ16 869 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 PCDHB13Q9Y5F0 798 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 LRRC37AA6NMS7 1700 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 PTGER2P43116 358 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 BLMHQ13867 455 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 SYT2Q8N9I0 419 aaPredicted RBP14.29□□□□□ -0.12
USP40-214ENST00000483519 PSTPIP2Q9H939 334 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 JMJD4Q9H9V9 463 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 MTUS1Q9ULD2 1270 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 PCDHA3Q9Y5H8 950 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 ALG6Q9Y672 507 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 PLIN4Q96Q06 1357 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 IRS2Q9Y4H2 1338 aa14.29□□□□□ -0.12
USP40-214ENST00000483519 GCNT3O95395 438 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 SNHG28P0DPA3 235 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 ALAS1P13196 640 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 BTDP43251 543 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 SARNPP82979 210 aaKnown RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 CALCOCO2Q13137 446 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 UBAP2Q5T6F2 1119 aaKnown RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 SPICE1Q8N0Z3 855 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 LRRC47Q8N1G4 583 aaKnown RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 CNBD1Q8NA66 436 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 CKAP2Q8WWK9 683 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 GLT8D2Q9H1C3 349 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 USP40Q9NVE5 1235 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 ADAM22Q9P0K1 906 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 KLHL14Q9P2G3 628 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 PPP1R1BQ9UD71 204 aaPredicted RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 CDK5RAP2Q96SN8 1893 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 A8MUI8 341 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 TBCAO75347 108 aaKnown RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 CCNB1P14635 433 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 PSMC2P35998 433 aaKnown RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 PABPC4Q13310 644 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP40-214ENST00000483519 MKRN4PQ13434 485 aaPredicted RBP14.28□□□□□ -0.12
USP40-214ENST00000483519 CCDC25Q86WR0 208 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 CCDC105Q8IYK2 499 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 FAM186BQ8IYM0 893 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 ADGRF4Q8IZF3 695 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 TEX9Q8N6V9 391 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 FBF1Q8TES7 1133 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 ZSWIM1Q9BR11 485 aa14.28□□□□□ -0.12
USP40-214ENST00000483519 MTMR4Q9NYA4 1195 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms