RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 MYL7Q01449 175 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 NBPF9Q3BBW0 867 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 ANKRD20A8PQ5CZ79 823 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 LRRC45Q96CN5 670 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 FMO2Q99518 471 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 LXNQ9BS40 222 aa10.67□□□□□ -0.7
SS18-203ENST00000415083 RANBP17Q9H2T7 1088 aaKnown RBP10.67□□□□□ -0.7
SS18-203ENST00000415083 ANKRD62A6NC57 917 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 A6NNZ2 444 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 FTLP02792 175 aaPredicted RBP10.66□□□□□ -0.7
SS18-203ENST00000415083 ADSSP30520 456 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 MNAT1P51948 309 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 SF3A3Q12874 501 aaKnown RBP eCLIP10.66□□□□□ -0.74e-6■■■■□ 22.2
SS18-203ENST00000415083 SLC29A2Q14542 456 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 IFI16Q16666 785 aaKnown RBP10.66□□□□□ -0.7
SS18-203ENST00000415083 UGCGQ16739 394 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 TUBB8Q3ZCM7 444 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 GRIPAP1Q4V328 841 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 ODR4Q5SWX8 454 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 SYCE1Q8N0S2 351 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 OTUD6BQ8N6M0 293 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 EPS8L3Q8TE67 593 aaKnown RBP10.66□□□□□ -0.7
SS18-203ENST00000415083 TELO2Q9Y4R8 837 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 ZNF536O15090 1300 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 ARID2Q68CP9 1835 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 NPM3O75607 178 aaKnown RBP10.66□□□□□ -0.7
SS18-203ENST00000415083 TRIM37O94972 964 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 COMTP21964 271 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 MMP13P45452 471 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 DGKZQ13574 1117 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 STRIP1Q5VSL9 837 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 MCTP2Q6DN12 878 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 SLC47A2Q86VL8 602 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 FAM178BQ8IXR5 827 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 RPUSD2Q8IZ73 545 aaKnown RBP10.66□□□□□ -0.7
SS18-203ENST00000415083 EPS8L1Q8TE68 723 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 TRIM7Q9C029 511 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 SLC40A1Q9NP59 571 aa10.66□□□□□ -0.7
SS18-203ENST00000415083 UBE2TQ9NPD8 197 aaPredicted RBP10.66□□□□□ -0.7
SS18-203ENST00000415083 KCNJ1P48048 391 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 GCLMP48507 274 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 PLTPP55058 493 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 FMO1Q01740 532 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 PRPF4BQ13523 1007 aaKnown RBP10.65□□□□□ -0.7
SS18-203ENST00000415083 LLGL1Q15334 1064 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 KRT71Q3SY84 523 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 CEP55Q53EZ4 464 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 LLGL2Q6P1M3 1020 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 PODNQ7Z5L7 613 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 UHMK1Q8TAS1 419 aaKnown RBP10.65□□□□□ -0.7
SS18-203ENST00000415083 PSPC1Q8WXF1 523 aaKnown RBP10.65□□□□□ -0.7
SS18-203ENST00000415083 DDX1Q92499 740 aaKnown RBP10.65□□□□□ -0.7
SS18-203ENST00000415083 PSMD1Q99460 953 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 ZSWIM1Q9BR11 485 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 WDR11Q9BZH6 1224 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 GPRC5CQ9NQ84 441 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 FAM114A2Q9NRY5 505 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 PARP14Q460N5 1801 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 MMEP08473 750 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 CHN1P15882 459 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 PPP2R5AQ15172 486 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 SCARA3Q6AZY7 606 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 ANKS1BQ7Z6G8 1248 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 TMEM174Q8WUU8 243 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 FAM129AQ9BZQ8 928 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 TMEM117Q9H0C3 514 aa10.65□□□□□ -0.7
SS18-203ENST00000415083 PABPC3Q9H361 631 aaKnown RBP10.65□□□□□ -0.7
SS18-203ENST00000415083 UTP11Q9Y3A2 253 aaKnown RBP10.65□□□□□ -0.7
SS18-203ENST00000415083 DDX39AO00148 427 aaKnown RBP10.65□□□□□ -0.71
SS18-203ENST00000415083 RARAP10276 462 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 FGFR4P22455 802 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 RBM5P52756 815 aaKnown RBP eCLIP10.65□□□□□ -0.71
SS18-203ENST00000415083 PMS2P54278 862 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 IKQ13123 557 aaPredicted RBP10.65□□□□□ -0.71
SS18-203ENST00000415083 C11orf63Q6NUN7 778 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 LMBR1Q8WVP7 490 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 XPO6Q96QU8 1125 aaKnown RBP10.65□□□□□ -0.71
SS18-203ENST00000415083 AZI2Q9H6S1 392 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 PCYOX1Q9UHG3 505 aa10.65□□□□□ -0.71
SS18-203ENST00000415083 O00370 1275 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 PHF2O75151 1096 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 ZNF76P36508 570 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 DRG2P55039 364 aaKnown RBP10.64□□□□□ -0.71
SS18-203ENST00000415083 CYP1B1Q16678 543 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 AOC3Q16853 763 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 RNF187Q5TA31 235 aaPredicted RBP10.64□□□□□ -0.71
SS18-203ENST00000415083 DAB2IPQ5VWQ8 1189 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 CCDC26Q8TAB7 109 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 C7orf43Q8WVR3 580 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 CTNNBL1Q8WYA6 563 aaPredicted RBP10.64□□□□□ -0.71
SS18-203ENST00000415083 ZKSCAN4Q969J2 545 aaPredicted RBP10.64□□□□□ -0.71
SS18-203ENST00000415083 AKT1S1Q96B36 256 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 CEP89Q96ST8 783 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 DDX23Q9BUQ8 820 aaKnown RBP10.64□□□□□ -0.71
SS18-203ENST00000415083 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.64□□□□□ -0.713e-7■■■■■ 30.4
SS18-203ENST00000415083 PKD2L1Q9P0L9 805 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 SERPINA10Q9UK55 444 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 TMX2Q9Y320 296 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 DAAM1Q9Y4D1 1078 aa10.64□□□□□ -0.71
SS18-203ENST00000415083 UBE4BO95155 1302 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms