RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SWSAP1Q6NVH7 229 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 ZNF571Q7Z3V5 609 aaPredicted RBP15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 SYTL5Q8TDW5 730 aaPredicted RBP15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 CCT8L2Q96SF2 557 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 COPB2P35606 906 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 GUCY2DQ02846 1103 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 CCDC121Q6ZUS5 278 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 FBXO41Q8TF61 875 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 TBC1D31Q96DN5 1066 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 PPP1R16BQ96T49 567 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 CEP72Q9P209 647 aa15.68■□□□□ 0.1
SHROOM1-208ENST00000617339 EPHB4P54760 987 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 MAP2K1Q02750 393 aaPredicted RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 TKFCQ3LXA3 575 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 ALKBH5Q6P6C2 394 aaKnown RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 KAT5Q92993 513 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 EPB41L5Q9HCM4 733 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 HAUS2Q9NVX0 235 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 NR1D1P20393 614 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 TRADDQ15628 312 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 HGSNATQ68CP4 663 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 BTNL9Q6UXG8 535 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 C1orf186Q6ZWK4 172 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 NLRX1Q86UT6 975 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 CREG2Q8IUH2 290 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 PPM1KQ8N3J5 372 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 TRIM58Q8NG06 486 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 RBM46Q8TBY0 533 aaKnown RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 OSBPL9Q96SU4 736 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 RANBP17Q9H2T7 1088 aaKnown RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 ELP3Q9H9T3 547 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 UBE2TQ9NPD8 197 aaPredicted RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 RBM12Q9NTZ6 932 aaKnown RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 TYW1Q9NV66 732 aaKnown RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 GABBR1Q9UBS5 961 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 DNAJC12Q9UKB3 198 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 FECHP22830 423 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 NLRP14Q86W24 1093 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 CRYGNQ8WXF5 182 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 CEP170P1Q96L14 293 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 CDK5RAP2Q96SN8 1893 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 PSMD1Q99460 953 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 FHDC1Q9C0D6 1143 aaPredicted RBP15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 STIM2Q9P246 746 aa15.67■□□□□ 0.1
SHROOM1-208ENST00000617339 KIF1CO43896 1103 aaKnown RBP15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 SERPING1P05155 500 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 ICAM1P05362 532 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 PSMC2P35998 433 aaKnown RBP15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 MTERF2Q49AM1 385 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 FAM160B2Q86V87 743 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 SLC35C1Q96A29 364 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 KRT12Q99456 494 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 TOPORSQ9NS56 1045 aaPredicted RBP15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 SNX12Q9UMY4 172 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 ZNF536O15090 1300 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 FSBPO95073 299 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 YWHABP31946 246 aaKnown RBP15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 FSTL1Q12841 308 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 HLTFQ14527 1009 aaKnown RBP eCLIP15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 ODF2Q5BJF6 829 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 AGBL3Q8NEM8 1001 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 OR2W6PQ8NHA6 318 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 EPN3Q9H201 632 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 MARK3P27448 753 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 DRAP1Q14919 205 aaPredicted RBP15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 KLHDC7AQ5VTJ3 777 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 ZNF720Q7Z2F6 126 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 TAF4BQ92750 862 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 CEP63Q96MT8 703 aa15.66■□□□□ 0.1
SHROOM1-208ENST00000617339 ATMINO43313 823 aaPredicted RBP15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 CYP3A4P08684 503 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 KRT13P13646 458 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 MYCBPAPQ8TBZ2 947 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 PI4K2AQ9BTU6 479 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 AS3MTQ9HBK9 375 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 SEPT9Q9UHD8 586 aaPredicted RBP15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 MAST2Q6P0Q8 1798 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 TBX3O15119 743 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 GNA14O95837 355 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 FKBP1AP62942 108 aaKnown RBP15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 CNTN2Q02246 1040 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 PTGISQ16647 500 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 DAAM2Q86T65 1068 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 OSGEPQ9NPF4 335 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 AGPAT3Q9NRZ7 376 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 LARSQ9P2J5 1176 aaKnown RBP15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 MCM8Q9UJA3 840 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 EMSYQ7Z589 1322 aa15.65■□□□□ 0.1
SHROOM1-208ENST00000617339 ZNF233A6NK53 670 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 PDXKO00764 312 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 PPP1R37O75864 691 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 GBP2P32456 591 aaPredicted RBP15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 CIITAP33076 1130 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 ZNF211Q13398 564 aaPredicted RBP15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 SPRED3Q2MJR0 410 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 SUPT20HL1Q3ZLR7 823 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 MIEF2Q96C03 454 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 PLCB1Q9NQ66 1216 aa15.64■□□□□ 0.1
SHROOM1-208ENST00000617339 ATRNL1Q5VV63 1379 aa15.64■□□□□ 0.09
SHROOM1-208ENST00000617339 PHF20L1A8MW92 1017 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms