RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MAPTP10636 758 aaKnown RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 GHRP10912 638 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 CSF2RAP15509 400 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 EIF4BP23588 611 aaKnown RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 TMOD1P28289 359 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 NMT1P30419 496 aaKnown RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 NAMPTP43490 491 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 PEX3P56589 373 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 KCNA1Q09470 495 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 DSC3Q14574 896 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 MXD4Q14582 209 aaPredicted RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 POSTNQ15063 836 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 RBM43Q6ZSC3 357 aaKnown RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 UNC13DQ70J99 1090 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 CRIPAKQ8N1N5 446 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 RNF149Q8NC42 400 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 KIAA0895Q8NCT3 520 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 CNNM3Q8NE01 707 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 DRC1Q96MC2 740 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 NLRP4Q96MN2 994 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 CCDC43Q96MW1 224 aaKnown RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 GDF15Q99988 308 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 CLSTN2Q9H4D0 955 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 ST6GALNAC4Q9H4F1 302 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 PARVGQ9HBI0 331 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 PRDM5Q9NQX1 630 aaPredicted RBP10.27□□□□□ -0.77
VPS35-211ENST00000569950 PCDHA5Q9Y5H7 936 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 SQORQ9Y6N5 450 aa10.27□□□□□ -0.77
VPS35-211ENST00000569950 FNDC1Q4ZHG4 1894 aaPredicted RBP10.26□□□□□ -0.77
VPS35-211ENST00000569950 PVALEFA0A1B0GWK0 134 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 H0YGN5 161 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 SLC16A4O15374 487 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 ASAP2O43150 1006 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 TSPAN1O60635 241 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 RHOBTB3O94955 611 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 RPLP2P05387 115 aaKnown RBP10.26□□□□□ -0.77
VPS35-211ENST00000569950 MYL1P05976 194 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 RAG1P15918 1043 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 CD52P31358 61 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 DNM2P50570 870 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 GTF2BQ00403 316 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 STK4Q13043 487 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 FAM187BQ17R55 369 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 KMT5BQ4FZB7 885 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 ZC2HC1CQ53FD0 456 aaPredicted RBP10.26□□□□□ -0.77
VPS35-211ENST00000569950 RASIP1Q5U651 963 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 SLC39A4Q6P5W5 647 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 TSHZ1Q6ZSZ6 1077 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 ZNF720Q7Z2F6 126 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 CEP57L1Q8IYX8 460 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 DBF4BQ8NFT6 615 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 HAPLN2Q9GZV7 340 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 C17orf75Q9HAS0 396 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 PANK4Q9NVE7 773 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 TMEM63CQ9P1W3 806 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 PADI3Q9ULW8 664 aa10.26□□□□□ -0.77
VPS35-211ENST00000569950 CITO14578 2027 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.25□□□□□ -0.77
VPS35-211ENST00000569950 LRRIQ4A6NIV6 560 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 TISP43B9A030 160 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 MEFVO15553 781 aaPredicted RBP10.25□□□□□ -0.77
VPS35-211ENST00000569950 TRAK2O60296 914 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 RPN1P04843 607 aaKnown RBP10.25□□□□□ -0.77
VPS35-211ENST00000569950 MYBP10242 640 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 GAP43P17677 238 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 MAGEA10P43363 369 aaPredicted RBP10.25□□□□□ -0.77
VPS35-211ENST00000569950 ASIC1P78348 528 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 KCNB1Q14721 858 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 NFKBIBQ15653 356 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 CAMK4Q16566 473 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 ODR4Q5SWX8 454 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 UBXN11Q5T124 520 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 EEF1DP3Q658K8 133 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 HAUS6Q7Z4H7 955 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 SRGAP1Q7Z6B7 1085 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 RSPH3Q86UC2 560 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 ZNF710Q8N1W2 664 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 MYCT1Q8N699 235 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 CCDC155Q8N6L0 562 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 SCFD1Q8WVM8 642 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 NLRP7Q8WX94 980 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 DPF3Q92784 378 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 TMEM134Q9H6X4 195 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 PTPRHQ9HD43 1115 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 IL23AQ9NPF7 189 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 TBC1D7Q9P0N9 293 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 SEL1LQ9UBV2 794 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 ST3GAL5Q9UNP4 418 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 GINS2Q9Y248 185 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 RALGAPA2Q2PPJ7 1873 aa10.25□□□□□ -0.77
VPS35-211ENST00000569950 KIAA1671Q9BY89 1806 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 DENND3A2RUS2 1198 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 FAM189A1O60320 539 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 KINO60870 393 aaKnown RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 TBCAO75347 108 aaKnown RBP10.24□□□□□ -0.77
VPS35-211ENST00000569950 FAM13AO94988 1023 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 PIGRP01833 764 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 ACRP10323 421 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 IDEP14735 1019 aa10.24□□□□□ -0.77
VPS35-211ENST00000569950 ATF7P17544 494 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms