RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ABCB4P21439 1286 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 MKRN3Q13064 507 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 ANO7Q6IWH7 933 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 AADACL2Q6P093 401 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 C3orf67Q6ZVT6 689 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 ZDHHC14Q8IZN3 488 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 SERPINB12Q96P63 405 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 TMOD4Q9NZQ9 345 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 SNED1Q8TER0 1413 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 DOT1LQ8TEK3 1739 aa18.42■□□□□ 0.54
SQSTM1-211ENST00000506690 DPPA5A6NC42 116 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 HIBADHP31937 336 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 SOX5P35711 763 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 CTCFP49711 727 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 ACVR2BQ13705 512 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 LONRF1Q17RB8 773 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 PARP6Q2NL67 630 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 SH3RF3Q8TEJ3 882 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 COA7Q96BR5 231 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 MXD3Q9BW11 206 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 UBA5Q9GZZ9 404 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 RNPEPL1Q9HAU8 725 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 METTL14Q9HCE5 456 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 COG5Q9UP83 839 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 NAV1Q8NEY1 1877 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 PDXKO00764 312 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 NEFHP12036 1026 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 SF3B3Q15393 1217 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 SLC30A9Q6PML9 568 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 TRMT10CQ7L0Y3 403 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 EPM2AIP1Q7L775 607 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 OTUD6AQ7L8S5 288 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 DZIP1Q86YF9 867 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 CRAMP1Q96RY5 1269 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 ETNK1Q9HBU6 452 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 ANKIB1Q9P2G1 1089 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 KLHL14Q9P2G3 628 aa18.41■□□□□ 0.54
SQSTM1-211ENST00000506690 POTEB3A0JP26 581 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 POTECB2RU33 542 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 CALB2P22676 271 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 TNNI2P48788 182 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 SLC12A3P55017 1021 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 TCERG1LQ5VWI1 586 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 CCDC137Q6PK04 289 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 POTEBQ6S5H4 581 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 NLRP3Q96P20 1036 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 ANKRD63C9JTQ0 380 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 SLC16A3O15427 465 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 AP1G2O75843 785 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 RAB27AP51159 221 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 HADHBP55084 474 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 LMNB2Q03252 620 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 MPP2Q14168 576 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 CYFIP1Q7L576 1253 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 ECHDC2Q86YB7 292 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 NEDD1Q8NHV4 660 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 C8orf37Q96NL8 207 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 THAP2Q9H0W7 228 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 TAOK3Q9H2K8 898 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 TFCP2L1Q9NZI6 479 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 ALG6Q9Y672 507 aa18.4■□□□□ 0.54
SQSTM1-211ENST00000506690 MIF4GDA9UHW6 222 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CALUO43852 315 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 PEX11AO75192 247 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 ATP5DP30049 168 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CYP1B1Q16678 543 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 MAEAQ7L5Y9 396 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 APLFQ8IW19 511 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 NGLY1Q96IV0 654 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 TGS1Q96RS0 853 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 EYA3Q99504 573 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 LRMDAQ9H2I8 198 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 ZHX3Q9H4I2 956 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 TXLNGQ9NUQ3 528 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CCDC87Q9NVE4 849 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 USP40Q9NVE5 1235 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 ARFGEF1Q9Y6D6 1849 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 LOC102724428A0A0B4J2F2 783 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 ANKRD62A6NC57 917 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 USP17L5A8MUK1 530 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 SLC26A4O43511 780 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 GGPS1O95749 300 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 GH1P01241 217 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 KRT18P05783 430 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CASP4P49662 377 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CLK2P49760 499 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 SIK1P57059 783 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 MRPS35P82673 323 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 RRP1BQ14684 758 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 MTFR1Q15390 333 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 FAM98CQ17RN3 349 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 TRIM68Q6AZZ1 485 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 FBF1Q8TES7 1133 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CELF1Q92879 486 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 DDX23Q9BUQ8 820 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 STK33Q9BYT3 514 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 CDC42EP4Q9H3Q1 356 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 MLXIPLQ9NP71 852 aa18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 ZMYND8Q9ULU4 1186 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-211ENST00000506690 MPHOSPH10O00566 681 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms