RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 RUFY4Q6ZNE9 571 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 B4GALNT4Q76KP1 1039 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 LDHDQ86WU2 507 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 EPN3Q9H201 632 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 NEUROG2Q9H2A3 272 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 FEM1BQ9UK73 627 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 YDJCA8MPS7 323 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 H0YGN5 161 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 DDX3YO15523 660 aaKnown RBP17.78■□□□□ 0.44
HOXD3-201ENST00000249440 PPIP5K2O43314 1243 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 GUCY1A3Q02108 690 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 MAPK7Q13164 816 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 UAP1Q16222 522 aaPredicted RBP17.78■□□□□ 0.44
HOXD3-201ENST00000249440 RHOT2Q8IXI1 618 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 DAW1Q8N136 415 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 PROCA1Q8NCQ7 364 aaPredicted RBP17.78■□□□□ 0.44
HOXD3-201ENST00000249440 LMO3Q8TAP4 145 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 C7orf43Q8WVR3 580 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 MTFR1LQ9H019 292 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 THAP2Q9H0W7 228 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 NFS1Q9Y697 457 aa17.78■□□□□ 0.44
HOXD3-201ENST00000249440 CLRN2A0PK11 232 aa17.77■□□□□ 0.44
HOXD3-201ENST00000249440 FOXN3O00409 490 aaPredicted RBP17.77■□□□□ 0.44
HOXD3-201ENST00000249440 MAPTP10636 758 aaKnown RBP17.77■□□□□ 0.44
HOXD3-201ENST00000249440 MDH1P40925 334 aaKnown RBP17.77■□□□□ 0.44
HOXD3-201ENST00000249440 ZYXQ15942 572 aaKnown RBP17.77■□□□□ 0.44
HOXD3-201ENST00000249440 SAMD1Q6SPF0 538 aaPredicted RBP17.77■□□□□ 0.44
HOXD3-201ENST00000249440 TMEM174Q8WUU8 243 aa17.77■□□□□ 0.44
HOXD3-201ENST00000249440 UBLCP1Q8WVY7 318 aaPredicted RBP17.77■□□□□ 0.44
HOXD3-201ENST00000249440 AGPAT1Q99943 283 aa17.77■□□□□ 0.44
HOXD3-201ENST00000249440 RAB17Q9H0T7 212 aa17.77■□□□□ 0.44
HOXD3-201ENST00000249440 DEFB129Q9H1M3 183 aa17.77■□□□□ 0.44
HOXD3-201ENST00000249440 IGSF9BQ9UPX0 1349 aa17.77■□□□□ 0.44
HOXD3-201ENST00000249440 GOLGA6L10A0A0M3HER8 536 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 P4HA2O15460 535 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 LRRN2O75325 713 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 P4HBP07237 508 aaKnown RBP17.77■□□□□ 0.43
HOXD3-201ENST00000249440 POU5F1Q01860 360 aaKnown RBP17.77■□□□□ 0.43
HOXD3-201ENST00000249440 BIRC3Q13489 604 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 PRPF4BQ13523 1007 aaKnown RBP17.77■□□□□ 0.43
HOXD3-201ENST00000249440 TNIP1Q15025 636 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 MIER3Q7Z3K6 550 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 SPATS2Q86XZ4 545 aaKnown RBP17.77■□□□□ 0.43
HOXD3-201ENST00000249440 SLC16A10Q8TF71 515 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 CENPHQ9H3R5 247 aa17.77■□□□□ 0.43
HOXD3-201ENST00000249440 UBE2TQ9NPD8 197 aaPredicted RBP17.77■□□□□ 0.43
HOXD3-201ENST00000249440 ZNF70Q9UC06 446 aaPredicted RBP17.77■□□□□ 0.43
HOXD3-201ENST00000249440 DDX39AO00148 427 aaKnown RBP17.76■□□□□ 0.43
HOXD3-201ENST00000249440 PTENP60484 403 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 DLGAP5Q15398 846 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 TADA2BQ86TJ2 420 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 ARHGEF26Q96DR7 871 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 CELF4Q9BZC1 486 aaKnown RBP17.76■□□□□ 0.43
HOXD3-201ENST00000249440 TAS2R14Q9NYV8 317 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 SAMM50Q9Y512 469 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 EMSYQ7Z589 1322 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 SRRM3A6NNA2 597 aaPredicted RBP17.76■□□□□ 0.43
HOXD3-201ENST00000249440 ITGB5P18084 799 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 VAMP7P51809 220 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 HADHBP55084 474 aaKnown RBP17.76■□□□□ 0.43
HOXD3-201ENST00000249440 ZNF844Q08AG5 666 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 DCAF12L1Q5VU92 463 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 ACCSQ96QU6 501 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 KCNH7Q9NS40 1196 aa17.76■□□□□ 0.43
HOXD3-201ENST00000249440 PSME4Q14997 1843 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 HSD17B4P51659 736 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 DLG4P78352 724 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 TTC31Q49AM3 519 aaPredicted RBP17.75■□□□□ 0.43
HOXD3-201ENST00000249440 MAEAQ7L5Y9 396 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 TMC3Q7Z5M5 1100 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 PALB2Q86YC2 1186 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 C12orf56Q8IXR9 622 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 OGFOD1Q8N543 542 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 OR2W6PQ8NHA6 318 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 PCIF1Q9H4Z3 704 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 FBXO28Q9NVF7 368 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 PFASO15067 1338 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 TBC1D12O60347 775 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 HPDP32754 393 aaPredicted RBP17.75■□□□□ 0.43
HOXD3-201ENST00000249440 FLT3P36888 993 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 PTGISQ16647 500 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 NAA35Q5VZE5 725 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 RSBN1LQ6PCB5 846 aaPredicted RBP17.75■□□□□ 0.43
HOXD3-201ENST00000249440 DPH5Q9H2P9 285 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 DBR1Q9UK59 544 aaKnown RBP17.75■□□□□ 0.43
HOXD3-201ENST00000249440 COG5Q9UP83 839 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 ZHX2Q9Y6X8 837 aa17.75■□□□□ 0.43
HOXD3-201ENST00000249440 ATXN2Q99700 1313 aaKnown RBP17.74■□□□□ 0.43
HOXD3-201ENST00000249440 C21orf2O43822 256 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 ERLIN2O94905 339 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 ICAM1P05362 532 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 DR1Q01658 176 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 DHX9Q08211 1270 aaKnown RBP17.74■□□□□ 0.43
HOXD3-201ENST00000249440 NIPA1Q7RTP0 329 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 XXYLT1Q8NBI6 393 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 NLGN2Q8NFZ4 835 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 CCPG1Q9ULG6 757 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 ALG6Q9Y672 507 aa17.74■□□□□ 0.43
HOXD3-201ENST00000249440 MIF4GDA9UHW6 222 aaKnown RBP17.73■□□□□ 0.43
HOXD3-201ENST00000249440 PLS3P13797 630 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms