RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ADGRF1Q5T601 910 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 TRIM68Q6AZZ1 485 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ITPRIPL1Q6GPH6 555 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 LLGL2Q6P1M3 1020 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CNKSR3Q6P9H4 555 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 BTNL9Q6UXG8 535 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SPATC1Q76KD6 591 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 BEND5Q7L4P6 421 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 MTERF4Q7Z6M4 381 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 NLRX1Q86UT6 975 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 TSPYL5Q86VY4 417 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 MYLK4Q86YV6 388 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 GALNT13Q8IUC8 556 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 HID1Q8IV36 788 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SLC41A1Q8IVJ1 513 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 MYOCDQ8IZQ8 938 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.4□□□□□ -1.87
VIM-210ENST00000637053 C7orf31Q8N865 590 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 FAM169BQ8N8A8 192 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 NAT8LQ8N9F0 302 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 TRIML1Q8N9V2 468 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 LINC01356Q8N9X3 169 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ZSWIM2Q8NEG5 633 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 FNIP1Q8TF40 1166 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 LINC01599Q8WXQ3 324 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 HDAC2Q92769 488 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 DPF3Q92784 378 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ARHGEF2Q92974 986 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 VWCEQ96DN2 955 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 RBM18Q96H35 190 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 COX4I2Q96KJ9 171 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 FAM81BQ96LP2 452 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 RMDN3Q96TC7 470 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CRB3Q9BUF7 120 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 TARS2Q9BW92 718 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 NAA15Q9BXJ9 866 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 SLC26A6Q9BXS9 759 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SCAND2PQ9GZW5 306 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 UNC45AQ9H3U1 944 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 MAN1C1Q9NR34 630 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 KCNQ5Q9NR82 932 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 TRMT13Q9NUP7 481 aaKnown RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 EXOC1Q9NV70 894 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SIRT5Q9NXA8 310 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 FNIP2Q9P278 1114 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 MTRRQ9UBK8 725 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 CLIP2Q9UDT6 1046 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 RCAN3Q9UKA8 241 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 ZBTB21Q9ULJ3 1066 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 SPEF1Q9Y4P9 236 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 PAXBP1Q9Y5B6 917 aa3.4□□□□□ -1.87
VIM-210ENST00000637053 EPN1Q9Y6I3 576 aaPredicted RBP3.4□□□□□ -1.87
VIM-210ENST00000637053 SYNJ2BP-COX16A0A087WUM0 186 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 LINC00854A0A1B0GVQ3 168 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 K7ESM1 405 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 HRKO00198 91 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 ERC2O15083 957 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 GPR39O43194 453 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 GRIN3BO60391 1043 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 KLHL41O60662 606 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 DKC1O60832 514 aaKnown RBP eCLIP3.39□□□□□ -1.87
VIM-210ENST00000637053 MTRF1O75570 445 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 RFPL3O75679 317 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 DNTTP04053 509 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 PARP1P09874 1014 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 HSPA5P11021 654 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 P4HA1P13674 534 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 ZKSCAN1P17029 563 aaPredicted RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 CYP7A1P22680 504 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 POLR2BP30876 1174 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 RBM5P52756 815 aaKnown RBP eCLIP3.39□□□□□ -1.87
VIM-210ENST00000637053 SESN3P58005 492 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 SLC7A5Q01650 507 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 AKAP17AQ02040 695 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 SSRP1Q08945 709 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 STRN3Q13033 797 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 CBX2Q14781 532 aaPredicted RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 TNIP1Q15025 636 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 ACAP1Q15027 740 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 ARHGAP29Q52LW3 1261 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 ANKRD39Q53RE8 183 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 C10orf76Q5T2E6 689 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 RNF219Q5W0B1 726 aaPredicted RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 SLC6A19Q695T7 634 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 HEATR6Q6AI08 1181 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 TATDN1Q6P1N9 297 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 CRTC1Q6UUV9 634 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 NXPE4Q6UWF7 544 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 TPTE2Q6XPS3 522 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 CEP68Q76N32 757 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 ENOSF1Q7L5Y1 443 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 EPM2AIP1Q7L775 607 aaPredicted RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 IQCA1Q86XH1 822 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 IGDCC3Q8IVU1 814 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 NRSN1Q8IZ57 195 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 CCAR2Q8N163 923 aaKnown RBP3.39□□□□□ -1.87
VIM-210ENST00000637053 FAM43AQ8N2R8 423 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 DNAJB8Q8NHS0 232 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 SSH3Q8TE77 659 aa3.39□□□□□ -1.87
VIM-210ENST00000637053 MZB1Q8WU39 189 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms