RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 RHPN2Q8IUC4 686 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 USP38Q8NB14 1042 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 PHOSPHO2Q8TCD6 241 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 NACC1Q96RE7 527 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 MAP7D2Q96T17 732 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 MTRQ99707 1265 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 CCDC113Q9H0I3 377 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 POLR3FQ9H1D9 316 aaPredicted RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 BHMT2Q9H2M3 363 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 ZSCAN16Q9H4T2 348 aaPredicted RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 ATP6V0A4Q9HBG4 840 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 TFIP11Q9UBB9 837 aaKnown RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 HCSTQ9UBK5 93 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 GINS2Q9Y248 185 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 PCDHA11Q9Y5I1 949 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 SRPRBQ9Y5M8 271 aaKnown RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 MYO7AQ13402 2215 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 MEIS3P2A8K0S8 358 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 LPXNO60711 386 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 RPS6KA5O75582 802 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 SLC34A2O95436 690 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 CYP11B2P19099 503 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 PLCG1P19174 1290 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 PTENP60484 403 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 FAM189BP81408 668 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 DNM1Q05193 864 aaKnown RBP10.96□□□□□ -0.65
CLN3-220ENST00000566040 MBTD1Q05BQ5 628 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 PAK2Q13177 524 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 ADGRE1Q14246 886 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 GRIN2CQ14957 1233 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 KARSQ15046 597 aaKnown RBP10.96□□□□□ -0.65
CLN3-220ENST00000566040 HAUS3Q68CZ6 603 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 RINT1Q6NUQ1 792 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 CABP7Q86V35 215 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 SLC7A3Q8WY07 619 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 SYMPKQ92797 1274 aaKnown RBP10.96□□□□□ -0.65
CLN3-220ENST00000566040 TIFAQ96CG3 184 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 NLRP4Q96MN2 994 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 PLIN2Q99541 437 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 CCSER1Q9C0I3 900 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 SEMA6BQ9H3T3 888 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 RGS18Q9NS28 235 aa10.96□□□□□ -0.65
CLN3-220ENST00000566040 TMEM265A0A087WTH1 108 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 NPHP3-ACAD11A0A0J9YXS1 232 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 LINC01553A4QN01 128 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 B4GALT5O43286 388 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 GAS2O43903 313 aaKnown RBP10.95□□□□□ -0.66
CLN3-220ENST00000566040 B4GALT3O60512 393 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 BMP15O95972 392 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 LONP1P36776 959 aaKnown RBP10.95□□□□□ -0.66
CLN3-220ENST00000566040 E2F4Q16254 413 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 FOXD4L6Q3SYB3 417 aaPredicted RBP10.95□□□□□ -0.66
CLN3-220ENST00000566040 FAM117BQ6P1L5 589 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 SHC4Q6S5L8 630 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 FOXD4L3Q6VB84 417 aaPredicted RBP10.95□□□□□ -0.66
CLN3-220ENST00000566040 OTUD6AQ7L8S5 288 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 MYOCDQ8IZQ8 938 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 ERMNQ8TAM6 284 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 PSPC1Q8WXF1 523 aaKnown RBP10.95□□□□□ -0.66
CLN3-220ENST00000566040 AK8Q96MA6 479 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 FAM161BQ96MY7 647 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 FIZ1Q96SL8 496 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 ADAM2Q99965 735 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 KIFC3Q9BVG8 833 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 AGPAT5Q9NUQ2 364 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 USP20Q9Y2K6 914 aa10.95□□□□□ -0.66
CLN3-220ENST00000566040 VWA8A3KMH1 1905 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 M0QZ92 97 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 TSPAN1O60635 241 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 EFCAB14O75071 495 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 DGKIO75912 1065 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 YEATS4O95619 227 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 TMOD1P28289 359 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 KCNJ6P48051 423 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 SARSP49591 514 aaKnown RBP10.94□□□□□ -0.66
CLN3-220ENST00000566040 POU5F1BQ06416 359 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 CLLU1OSQ5K130 101 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 KRT79Q5XKE5 535 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 MAEAQ7L5Y9 396 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 DEFB123Q8N688 67 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 SYT2Q8N9I0 419 aaPredicted RBP10.94□□□□□ -0.66
CLN3-220ENST00000566040 RNF149Q8NC42 400 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 NLRP7Q8WX94 980 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 TRAIPQ9BWF2 469 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 NFKBIZQ9BYH8 718 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 MTIF3Q9H2K0 278 aaKnown RBP10.94□□□□□ -0.66
CLN3-220ENST00000566040 ZNF576Q9H609 170 aa10.94□□□□□ -0.66
CLN3-220ENST00000566040 ARHGEF35A5YM69 484 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 RFXAPO00287 272 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 ABLIM1O14639 778 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 SLC26A4O43511 780 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 HIP1RO75146 1068 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 PPP6R2O75170 966 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 AMHP03971 560 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 PLA2G4BP0C869 781 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 SRGAP2CP0DJJ0 459 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 GUCY2CP25092 1073 aa10.93□□□□□ -0.66
CLN3-220ENST00000566040 AFF1P51825 1210 aaKnown RBP10.93□□□□□ -0.66
CLN3-220ENST00000566040 CACNB1Q02641 598 aaPredicted RBP10.93□□□□□ -0.66
CLN3-220ENST00000566040 NFX1Q12986 1120 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms