RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 NUMBLQ9Y6R0 609 aa6.36□□□□□ -1.39
SCFD1-221ENST00000556534 MAFGO15525 162 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 SEC24DO94855 1032 aaPredicted RBP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 SESN2P58004 480 aaPredicted RBP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 PPARAQ07869 468 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 TRIM25Q14258 630 aaKnown RBP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 FSCN1Q16658 493 aaKnown RBP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 CT83Q5H943 113 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 SLFN13Q68D06 897 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 CLEC14AQ86T13 490 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 OR14K1Q8NGZ2 314 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 PPP1R14CQ8TAE6 165 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 LMBR1Q8WVP7 490 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 NEIL1Q96FI4 390 aaPredicted RBP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 HIST1H2AHQ96KK5 128 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 ORAI2Q96SN7 254 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 RBM15Q96T37 977 aaKnown RBP eCLIP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 HIST1H2AJQ99878 128 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 FDXACB1Q9BRP7 624 aaPredicted RBP6.35□□□□□ -1.39
SCFD1-221ENST00000556534 TRIM8Q9BZR9 551 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 KCTD10Q9H3F6 313 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 C14orf119Q9NWQ9 140 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 FAM184BQ9ULE4 1060 aa6.35□□□□□ -1.39
SCFD1-221ENST00000556534 ITGB3P05106 788 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 HNRNPLP14866 589 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCFD1-221ENST00000556534 ENPP1P22413 925 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 GPR15P49685 360 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 ZCRB1Q8TBF4 217 aaKnown RBP6.34□□□□□ -1.39
SCFD1-221ENST00000556534 GFM2Q969S9 779 aaKnown RBP6.34□□□□□ -1.39
SCFD1-221ENST00000556534 AHCYL2Q96HN2 611 aaKnown RBP6.34□□□□□ -1.39
SCFD1-221ENST00000556534 LMF1Q96S06 567 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 OSBPL6Q9BZF3 934 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 SLC5A4Q9NY91 659 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 USP18Q9UMW8 372 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 OAZ3Q9UMX2 235 aa6.34□□□□□ -1.39
SCFD1-221ENST00000556534 ZNF536O15090 1300 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 C2orf78A6NCI8 922 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 GPR42O15529 346 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 H2AFYO75367 372 aaKnown RBP6.33□□□□□ -1.4
SCFD1-221ENST00000556534 LPLP06858 475 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 RAC3P60763 192 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 ADAM8P78325 824 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 FAPQ12884 760 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 DUSP8Q13202 625 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.33□□□□□ -1.4
SCFD1-221ENST00000556534 CCDC178Q5BJE1 867 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 LILRA6Q6PI73 481 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 GAREM2Q75VX8 874 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 CNTD1Q8N815 330 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 GAB3Q8WWW8 586 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 RSAD2Q8WXG1 361 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 LPPQ93052 612 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 EAF2Q96CJ1 260 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-221ENST00000556534 SLC7A6OSQ96CW6 309 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-221ENST00000556534 LRRC37BQ96QE4 947 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 DPYSL5Q9BPU6 564 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 PUS7LQ9H0K6 701 aaKnown RBP6.33□□□□□ -1.4
SCFD1-221ENST00000556534 EVLQ9UI08 416 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-221ENST00000556534 PRSS50Q9UI38 385 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 CDY2AQ9Y6F7 541 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 SHROOM4Q9ULL8 1493 aa6.33□□□□□ -1.4
SCFD1-221ENST00000556534 KRTAP9-7A8MTY7 169 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 SCAND1P57086 179 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 EVA1CP58658 441 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 UGT8Q16880 541 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 LIMS2Q7Z4I7 341 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 OR14C36Q8NHC7 312 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 TGFBRAP1Q8WUH2 860 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 RELTQ969Z4 430 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 JADE2Q9NQC1 790 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 CCM2LQ9NUG4 571 aaPredicted RBP6.32□□□□□ -1.4
SCFD1-221ENST00000556534 KCNG1Q9UIX4 513 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 SYNPO2Q9UMS6 1093 aa6.32□□□□□ -1.4
SCFD1-221ENST00000556534 GOLGA8AA7E2F4 631 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 GOLGA8BA8MQT2 603 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 SLC26A4O43511 780 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 FOXD2O60548 495 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 GAAP10253 952 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 GPR3P46089 330 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 ADCY7P51828 1080 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 GUCY2FP51841 1108 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 LGALS4P56470 323 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 TCIRG1Q13488 830 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 MTMR1Q13613 665 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 SAFB2Q14151 953 aaKnown RBP eCLIP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 FAM50AQ14320 339 aaKnown RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 RPUSD2Q8IZ73 545 aaKnown RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 UNC5BQ8IZJ1 945 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 CBARPQ8N350 705 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 PIK3C3Q8NEB9 887 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 GCDHQ92947 438 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 GNRHR2Q96P88 292 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 MENTQ9BUN1 341 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 QRSL1Q9H0R6 528 aaKnown RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 MSL2Q9HCI7 577 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 PUF60Q9UHX1 559 aaKnown RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 EDARQ9UNE0 448 aa6.31□□□□□ -1.4
SCFD1-221ENST00000556534 RBM8AQ9Y5S9 174 aaKnown RBP6.31□□□□□ -1.4
SCFD1-221ENST00000556534 PMS2P1A4D2B8 440 aa6.3□□□□□ -1.4
SCFD1-221ENST00000556534 NPEPPSL1A6NEC2 478 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms