RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 EXOC7Q9UPT5 735 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 VAMP7P51809 220 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 DR1Q01658 176 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 NT5C1BQ96P26 610 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 EIF3HO15372 352 aaKnown RBP eCLIP16.03■□□□□ 0.161e-7■■■□□ 16.5
CUX1-215ENST00000556210 NCAPG2Q86XI2 1143 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 XXYLT1Q8NBI6 393 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 UNC45AQ9H3U1 944 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 C1orf112Q9NSG2 853 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.03■□□□□ 0.16
CUX1-215ENST00000556210 SRGAP2CP0DJJ0 459 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 NAB2Q15742 525 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 MEA1Q16626 185 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 FRMD5Q7Z6J6 570 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 DEFB132Q7Z7B7 95 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 PNMA8AQ86V59 439 aaPredicted RBP16.03■□□□□ 0.16
CUX1-215ENST00000556210 FAM163AQ96GL9 167 aaPredicted RBP16.03■□□□□ 0.16
CUX1-215ENST00000556210 FMO2Q99518 471 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 A0A1W2PQJ5 194 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 NOP56O00567 594 aaKnown RBP16.02■□□□□ 0.16
CUX1-215ENST00000556210 SYF2O95926 243 aaKnown RBP16.02■□□□□ 0.16
CUX1-215ENST00000556210 GUCY2CP25092 1073 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 HMGCS2P54868 508 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 DYNLT1P63172 113 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 C1orf54Q8WWF1 131 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 RAB17Q9H0T7 212 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 THAP2Q9H0W7 228 aa16.02■□□□□ 0.16
CUX1-215ENST00000556210 RXRBP28702 533 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 SOX5P35711 763 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 ACOT2P49753 483 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 BAATQ14032 418 aaPredicted RBP16.02■□□□□ 0.15
CUX1-215ENST00000556210 SNRNP48Q6IEG0 339 aaKnown RBP16.02■□□□□ 0.15
CUX1-215ENST00000556210 WRNIP1Q96S55 665 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 KLHL11Q9NVR0 708 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 GAKO14976 1311 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 SMARCA1P28370 1054 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 MAPK4P31152 587 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 QARSP47897 775 aaKnown RBP16.02■□□□□ 0.15
CUX1-215ENST00000556210 MAGOHP61326 146 aaKnown RBP16.02■□□□□ 0.15
CUX1-215ENST00000556210 ARSHQ5FYA8 562 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 HOOK3Q86VS8 718 aa16.02■□□□□ 0.15
CUX1-215ENST00000556210 TSEN2Q8NCE0 465 aaKnown RBP16.02■□□□□ 0.15
CUX1-215ENST00000556210 NXF1Q9UBU9 619 aaKnown RBP16.02■□□□□ 0.15
CUX1-215ENST00000556210 GOLGA8SH3BPF8 625 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 MYO1FO00160 1098 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 AMPD2Q01433 879 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 TRPC3Q13507 836 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 MCF2L2Q86YR7 1114 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 RNPC3Q96LT9 517 aaKnown RBP16.01■□□□□ 0.15
CUX1-215ENST00000556210 TAAR1Q96RJ0 339 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 SUGT1Q9Y2Z0 365 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 PCDHB4Q9Y5E5 795 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 ORC2Q13416 577 aaPredicted RBP16.01■□□□□ 0.15
CUX1-215ENST00000556210 CDR2LQ86X02 465 aaPredicted RBP16.01■□□□□ 0.15
CUX1-215ENST00000556210 SLC20A1Q8WUM9 679 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 UBXN6Q9BZV1 441 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 DNAJC18Q9H819 358 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 RNF146Q9NTX7 359 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 BAIAP2L1Q9UHR4 511 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 GGT7Q9UJ14 662 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 AGTPBP1Q9UPW5 1226 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 GRID2IPA4D2P6 1211 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 CTNND1O60716 968 aaKnown RBP16.01■□□□□ 0.15
CUX1-215ENST00000556210 PIK3CAP42336 1068 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 NAA25Q14CX7 972 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 TMEM119Q4V9L6 283 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 CIAPIN1Q6FI81 312 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 AADACL2Q6P093 401 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 PRPF38AQ8NAV1 312 aaKnown RBP16.01■□□□□ 0.15
CUX1-215ENST00000556210 CASKIN2Q8WXE0 1202 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 BAP1Q92560 729 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 KAT5Q92993 513 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 AKT1S1Q96B36 256 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 ANAPC7Q9UJX3 599 aa16.01■□□□□ 0.15
CUX1-215ENST00000556210 TLR2O60603 784 aa16■□□□□ 0.15
CUX1-215ENST00000556210 YWHABP31946 246 aaKnown RBP16■□□□□ 0.15
CUX1-215ENST00000556210 E2F5Q15329 346 aa16■□□□□ 0.15
CUX1-215ENST00000556210 DACT2Q5SW24 774 aa16■□□□□ 0.15
CUX1-215ENST00000556210 AGPAT3Q9NRZ7 376 aa16■□□□□ 0.15
CUX1-215ENST00000556210 TOPORSQ9NS56 1045 aaPredicted RBP16■□□□□ 0.15
CUX1-215ENST00000556210 SLITRK3O94933 977 aa16■□□□□ 0.15
CUX1-215ENST00000556210 NSFP46459 744 aaKnown RBP16■□□□□ 0.15
CUX1-215ENST00000556210 RPS6P62753 249 aaKnown RBP16■□□□□ 0.15
CUX1-215ENST00000556210 EDRF1Q3B7T1 1238 aa16■□□□□ 0.15
CUX1-215ENST00000556210 ANKS4BQ8N8V4 417 aa16■□□□□ 0.15
CUX1-215ENST00000556210 PBKQ96KB5 322 aa16■□□□□ 0.15
CUX1-215ENST00000556210 VCPKMTQ9H867 229 aa16■□□□□ 0.15
CUX1-215ENST00000556210 P4HBP07237 508 aaKnown RBP16■□□□□ 0.15
CUX1-215ENST00000556210 SGO2Q562F6 1265 aa16■□□□□ 0.15
CUX1-215ENST00000556210 GADL1Q6ZQY3 521 aa16■□□□□ 0.15
CUX1-215ENST00000556210 ZKSCAN4Q969J2 545 aaPredicted RBP16■□□□□ 0.15
CUX1-215ENST00000556210 TMEM143Q96AN5 459 aa16■□□□□ 0.15
CUX1-215ENST00000556210 NCAPGQ9BPX3 1015 aa16■□□□□ 0.15
CUX1-215ENST00000556210 BUD13Q9BRD0 619 aaKnown RBP eCLIP16■□□□□ 0.151e-6■■■□□ 16.1
CUX1-215ENST00000556210 C11orf70Q9BRQ4 267 aa16■□□□□ 0.15
CUX1-215ENST00000556210 TTC7AQ9ULT0 858 aaPredicted RBP16■□□□□ 0.15
CUX1-215ENST00000556210 STK24Q9Y6E0 443 aa16■□□□□ 0.15
CUX1-215ENST00000556210 MFAP3P55082 362 aa15.99■□□□□ 0.15
CUX1-215ENST00000556210 TFAMQ00059 246 aaKnown RBP15.99■□□□□ 0.15
CUX1-215ENST00000556210 GABPAQ06546 454 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms