RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 B3GNT9Q6UX72 402 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 TADA2BQ86TJ2 420 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 PACS2Q86VP3 889 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 SLC9A9Q8IVB4 645 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 FMNL3Q8IVF7 1028 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 CTNNBL1Q8WYA6 563 aaPredicted RBP12.02□□□□□ -0.48
HDAC9-228ENST00000524023 AKT1S1Q96B36 256 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 ZNF577Q9BSK1 485 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 STRA6Q9BX79 667 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 WDR11Q9BZH6 1224 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 RANBP17Q9H2T7 1088 aaKnown RBP12.02□□□□□ -0.48
HDAC9-228ENST00000524023 EHMT1Q9H9B1 1298 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 GOPCQ9HD26 462 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 DAAM1Q9Y4D1 1078 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 PPP1R37O75864 691 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 CPP00450 1065 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 FGGP02679 453 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 MYZAPP0CAP1 466 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 ABCB4P21439 1286 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 GUCY2CP25092 1073 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 CTNNA1P35221 906 aaKnown RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 FLT3P36888 993 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 MDH1P40925 334 aaKnown RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 BFSP1Q12934 665 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 PLS1Q14651 629 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 AOC3Q16853 763 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 ARHGAP44Q17R89 818 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 TTC31Q49AM3 519 aaPredicted RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 BANK1Q8NDB2 785 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 OR2W6PQ8NHA6 318 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 ARHGEF26Q96DR7 871 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 LXNQ9BS40 222 aa12.02□□□□□ -0.49
HDAC9-228ENST00000524023 CELF4Q9BZC1 486 aaKnown RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 QTRT2Q9H974 415 aaKnown RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 DIS3Q9Y2L1 958 aaKnown RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 MRPL11Q9Y3B7 192 aaKnown RBP12.02□□□□□ -0.49
HDAC9-228ENST00000524023 EXOC3O60645 756 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 HIP1RO75146 1068 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 TNFAIP3P21580 790 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 SETQ01105 290 aaPredicted RBP12.01□□□□□ -0.49
HDAC9-228ENST00000524023 ZNF844Q08AG5 666 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 MAPK7Q13164 816 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 MTMR3Q13615 1198 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 KIF22Q14807 665 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 PTGISQ16647 500 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 KCTD19Q17RG1 926 aaPredicted RBP12.01□□□□□ -0.49
HDAC9-228ENST00000524023 DCAF12L1Q5VU92 463 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 PHLDB3Q6NSJ2 640 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 B4GALNT4Q76KP1 1039 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 SYCP3Q8IZU3 236 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 DAW1Q8N136 415 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 LMO3Q8TAP4 145 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 CHURC1Q8WUH1 139 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 TEKT3Q9BXF9 490 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 FAM114A2Q9NRY5 505 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 TAS2R14Q9NYV8 317 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 ARHGEF35A5YM69 484 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 ANKRD62A6NC57 917 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 H0YIN7 160 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 IPO5O00410 1097 aaKnown RBP12.01□□□□□ -0.49
HDAC9-228ENST00000524023 MYBPC2Q14324 1141 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 STYK1Q6J9G0 422 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 PALB2Q86YC2 1186 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 RDH13Q8NBN7 331 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 UBLCP1Q8WVY7 318 aaPredicted RBP12.01□□□□□ -0.49
HDAC9-228ENST00000524023 HOOK2Q96ED9 719 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 THAP2Q9H0W7 228 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 CARD9Q9H257 536 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 CENPHQ9H3R5 247 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 UTP11Q9Y3A2 253 aaKnown RBP12.01□□□□□ -0.49
HDAC9-228ENST00000524023 NR2E1Q9Y466 385 aa12.01□□□□□ -0.49
HDAC9-228ENST00000524023 SRRM3A6NNA2 597 aaPredicted RBP12□□□□□ -0.49
HDAC9-228ENST00000524023 TCP10L2B9ZVM9 353 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 MYO1FO00160 1098 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 FOXN3O00409 490 aaPredicted RBP12□□□□□ -0.49
HDAC9-228ENST00000524023 RFX1P22670 979 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 HPDP32754 393 aaPredicted RBP12□□□□□ -0.49
HDAC9-228ENST00000524023 PTENP60484 403 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 NAA35Q5VZE5 725 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 MSL1Q68DK7 614 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 RUFY4Q6ZNE9 571 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 TMC3Q7Z5M5 1100 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 MICALL1Q8N3F8 863 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 ARFGAP2Q8N6H7 521 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 AGPAT1Q99943 283 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 DPH5Q9H2P9 285 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 SEPT11Q9NVA2 429 aaKnown RBP12□□□□□ -0.49
HDAC9-228ENST00000524023 COG5Q9UP83 839 aa12□□□□□ -0.49
HDAC9-228ENST00000524023 LRRN2O75325 713 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 LIG3P49916 1009 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 BIRC3Q13489 604 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 PRPF4BQ13523 1007 aaKnown RBP11.99□□□□□ -0.49
HDAC9-228ENST00000524023 NLRP14Q86W24 1093 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 SPATS2Q86XZ4 545 aaKnown RBP11.99□□□□□ -0.49
HDAC9-228ENST00000524023 NAP1L3Q99457 506 aaPredicted RBP11.99□□□□□ -0.49
HDAC9-228ENST00000524023 TRIM51Q9BSJ1 452 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 PAGR1Q9BTK6 254 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 ZBTB21Q9ULJ3 1066 aa11.99□□□□□ -0.49
HDAC9-228ENST00000524023 ATXN2Q99700 1313 aaKnown RBP11.99□□□□□ -0.49
HDAC9-228ENST00000524023 FAM170AA1A519 330 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms