RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TTC1Q99614 292 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PUS7LQ9H0K6 701 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 ABCC12Q96J65 1359 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 FRMD3A2A2Y4 597 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 TTLL13PA6NNM8 815 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 SPTLC1O15269 473 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 PPFIA4O75335 1185 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 AVPR1AP37288 418 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 SLC45A4Q5BKX6 768 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 MMTAG2Q9BU76 263 aaKnown RBP7.86□□□□□ -1.15
SCN9A-202ENST00000409435 PDGFDQ9GZP0 370 aaPredicted RBP7.86□□□□□ -1.15
SCN9A-202ENST00000409435 MRPL17Q9NRX2 175 aaKnown RBP7.86□□□□□ -1.15
SCN9A-202ENST00000409435 PANK4Q9NVE7 773 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 DAAM1Q9Y4D1 1078 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 SPDYE5A6NIY4 337 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 AKR1B10O60218 316 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 FOXO4P98177 505 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 BEX3Q00994 111 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 KRT81Q14533 505 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 TAF2Q6P1X5 1199 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 NOTUMQ6P988 496 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 RASAL3Q86YV0 1011 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 NEK9Q8TD19 979 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 CTAGE1Q96RT6 745 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 HAUS8Q9BT25 410 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 PRR12Q9ULL5 1215 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 RIC1Q4ADV7 1423 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 E9PMD0 336 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 MAFGO15525 162 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 RAB27AP51159 221 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 ISM2Q6H9L7 571 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 U2AF1L4Q8WU68 220 aaKnown RBP7.86□□□□□ -1.15
SCN9A-202ENST00000409435 POP1Q99575 1024 aaKnown RBP7.86□□□□□ -1.15
SCN9A-202ENST00000409435 TSC22D3Q99576 134 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 KIAA1683Q9H0B3 1180 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 ZBTB40Q9NUA8 1239 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 UNCXA6NJT0 531 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 CTTNQ14247 550 aaKnown RBP7.86□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF484Q5JVG2 852 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 CXCL17Q6UXB2 119 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 RNF149Q8NC42 400 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 KIF12Q96FN5 646 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 TMEM260Q9NX78 707 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 CLDND1Q9NY35 253 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 DEPDC5O75140 1603 aa7.86□□□□□ -1.15
SCN9A-202ENST00000409435 IKBKBO14920 756 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF165P49910 485 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 TTBK2Q6IQ55 1244 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 EFCAB12Q6NXP0 572 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 LRRC31Q6UY01 552 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 FLCNQ8NFG4 579 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 HEXIM2Q96MH2 286 aaKnown RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 PNMA5Q96PV4 448 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 FTHL17Q9BXU8 183 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 POLR3FQ9H1D9 316 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 USP18Q9UMW8 372 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 NR2E1Q9Y466 385 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 MED7O43513 233 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 QARSP47897 775 aaKnown RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 GPC3P51654 580 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 EFNA5P52803 228 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 PSMD6Q15008 389 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 ARL13BQ3SXY8 428 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 NUDCD3Q8IVD9 361 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 SAAL1Q96ER3 474 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 AGBL1Q96MI9 1066 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 BAG1Q99933 345 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 P4HBP07237 508 aaKnown RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 TCF7P36402 384 aaPredicted RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 LRMPQ12912 555 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 C20orf194Q5TEA3 1177 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 C12orf60Q5U649 245 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 EFCAB13Q8IY85 973 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 LMBR1Q8WVP7 490 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 DIABLOQ9NR28 239 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 JRKLQ9Y4A0 524 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 ZMYM6O95789 1325 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 MOXD2PA6NHM9 499 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 MX2P20592 715 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 POLE2P56282 527 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 TUBB2AQ13885 445 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 PRR23BQ6ZRT6 265 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 SHDQ96IW2 340 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 RPGRIP1Q96KN7 1286 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 TUBB2BQ9BVA1 445 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 SLC38A10Q9HBR0 1119 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 KCNQ5Q9NR82 932 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 ICAM1P05362 532 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 CSF1RP07333 972 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 ALCAMQ13740 583 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 PRAMEF19Q5SWL8 479 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 GRAMD4Q6IC98 578 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 IFT122Q9HBG6 1241 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 NCOA5Q9HCD5 579 aaKnown RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 MTMR4Q9NYA4 1195 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 TLR7Q9NYK1 1049 aaKnown RBP7.85□□□□□ -1.15
SCN9A-202ENST00000409435 TMEM131LA2VDJ0 1609 aa7.85□□□□□ -1.15
SCN9A-202ENST00000409435 A6NJR5 290 aa7.84□□□□□ -1.15
SCN9A-202ENST00000409435 CCDC159P0C7I6 412 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms