RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 EXOC3L4Q17RC7 722 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 KRT79Q5XKE5 535 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 SUPT20HQ8NEM7 779 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 ARHGEF2Q92974 986 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 CCDC134Q9H6E4 229 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 TFCP2L1Q9NZI6 479 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 TBK1Q9UHD2 729 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 RPS6KL1Q9Y6S9 549 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 TTC36A6NLP5 189 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 HIP1RO75146 1068 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 NEFHP12036 1026 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 VSTM1Q6UX27 236 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 ECHDC2Q86YB7 292 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 PALB2Q86YC2 1186 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 ZNF34Q8IZ26 560 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 TTC8Q8TAM2 541 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 RPS6KC1Q96S38 1066 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 CRNKL1Q9BZJ0 848 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 KCTD10Q9H3F6 313 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 EMILIN3Q9NT22 766 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 SEPT11Q9NVA2 429 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 G3BP2Q9UN86 482 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 LOC102724428A0A0B4J2F2 783 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 FESP07332 822 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 GNAZP19086 355 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 TARSP26639 723 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 CRKLP46109 303 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 SIK1P57059 783 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 MAPK7Q13164 816 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 PPP1R15BQ5SWA1 713 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 CPNE8Q86YQ8 564 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 PHC3Q8NDX5 983 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 TEKT4Q8WW24 435 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 KRT35Q92764 455 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 FAM84BQ96KN1 310 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 C6orf50Q9HD87 102 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 HAO1Q9UJM8 370 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 ARL2BPQ9Y2Y0 163 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 TNS2Q63HR2 1409 aa14.51□□□□□ -0.09
CCDC88C-201ENST00000331194 TSPY3P0CV98 308 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 TSPY8P0CW00 308 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 HSPA1LP34931 641 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PTGIRP43119 386 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 CASP4P49662 377 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 RXFP1Q9HBX9 757 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 USP21Q9UK80 565 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 BCS1LQ9Y276 419 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 DLEC1Q9Y238 1755 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PFASO15067 1338 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PALM3A6NDB9 673 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PCP11498 1178 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 RFC5P40937 340 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 SESN3P58005 492 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 C10orf76Q5T2E6 689 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 CWF19L1Q69YN2 538 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 REXO1Q8N1G1 1221 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 UCMAQ8WVF2 138 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 IFT74Q96LB3 600 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PWWP2AQ96N64 755 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 COG5Q9UP83 839 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 KIAA1024Q9UPX6 916 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 C2CD2Q9Y426 696 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PEX11AO75192 247 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 ENTPD5O75356 428 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 TMEM154Q6P9G4 183 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 ARHGAP27Q6ZUM4 889 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 DGKHQ86XP1 1220 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 CYP4X1Q8N118 509 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PRELID2Q8N945 189 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 SPIRE2Q8WWL2 714 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 CEP63Q96MT8 703 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PAIP2Q9BPZ3 127 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 SAP30BPQ9UHR5 308 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 NIP7Q9Y221 180 aaKnown RBP eCLIP14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 PCDHA2Q9Y5H9 948 aa14.5□□□□□ -0.09
CCDC88C-201ENST00000331194 AHCYL1O43865 530 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 GJB6O95452 261 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 TRAF1Q13077 416 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 GALNT17Q6IS24 598 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 C3orf67Q6ZVT6 689 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 TGS1Q96RS0 853 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 THAP2Q9H0W7 228 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 MYLK2Q9H1R3 596 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 ARMCX3Q9UH62 379 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 SPATA31A5Q5VU36 1347 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 SPATA31A7Q8IWB4 1347 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 ABCA3Q99758 1704 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 NHSL1Q5SYE7 1610 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 LTBP4Q8N2S1 1624 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 CETN3O15182 167 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 CLIC2O15247 247 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 TNNI2P48788 182 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 UBE2SQ16763 222 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 TMEM266Q2M3C6 531 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 CCDC152Q4G0S7 254 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 ZNF449Q6P9G9 518 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 SYCE1Q8N0S2 351 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 SPOCK2Q92563 424 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 SIX2Q9NPC8 291 aa14.49□□□□□ -0.09
CCDC88C-201ENST00000331194 DLGAP2Q9P1A6 1054 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms