RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 YWHABP31946 246 aaKnown RBP21.83■■□□□ 1.09
VPS53-201ENST00000291074 GALCP54803 685 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 GHRHRQ02643 423 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 PLA2G4FQ68DD2 849 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 PHLDB3Q6NSJ2 640 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 SLC9A9Q8IVB4 645 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 FZD1Q9UP38 647 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 HEXIM1O94992 359 aaKnown RBP21.83■■□□□ 1.08
VPS53-201ENST00000291074 TSEN2Q8NCE0 465 aaKnown RBP21.83■■□□□ 1.08
VPS53-201ENST00000291074 SLC30A5Q8TAD4 765 aa21.83■■□□□ 1.08
VPS53-201ENST00000291074 RUBCNQ92622 972 aa21.83■■□□□ 1.08
VPS53-201ENST00000291074 RMDN3Q96TC7 470 aa21.83■■□□□ 1.08
VPS53-201ENST00000291074 PSD3Q9NYI0 1048 aa21.83■■□□□ 1.08
VPS53-201ENST00000291074 EMSYQ7Z589 1322 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 PARP14Q460N5 1801 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 TULP1O00294 542 aaPredicted RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 CCNE2O96020 404 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 CARSP49589 748 aaKnown RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 GUCY2DQ02846 1103 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 KCTD19Q17RG1 926 aaPredicted RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 USP38Q8NB14 1042 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 CCDC43Q96MW1 224 aaKnown RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 TRERF1Q96PN7 1200 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 DBR1Q9UK59 544 aaKnown RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 RIPK3Q9Y572 518 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 IGSF9BQ9UPX0 1349 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 COL11A1P12107 1806 aaPredicted RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 TESPA1A2RU30 521 aaPredicted RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 GOLGA6BA6NDN3 693 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 PLS3P13797 630 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 ANXA13P27216 316 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 NPEPPSP55786 919 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 HNRNPH2P55795 449 aaKnown RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 NBPF12Q5TAG4 269 aaPredicted RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 PALB2Q86YC2 1186 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 KLHL7Q8IXQ5 586 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 ATG4CQ96DT6 458 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 EPB41L5Q9HCM4 733 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 OSGEPQ9NPF4 335 aa21.82■■□□□ 1.08
VPS53-201ENST00000291074 CTDP1Q9Y5B0 961 aaPredicted RBP21.82■■□□□ 1.08
VPS53-201ENST00000291074 CCDC66A2RUB6 948 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 NFKBIEO00221 500 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 SLC16A4O15374 487 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 CEP104O60308 925 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 CTNND1O60716 968 aaKnown RBP21.81■■□□□ 1.08
VPS53-201ENST00000291074 EPHB4P54760 987 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 PPP3CAQ08209 521 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 TNFAIP1Q13829 316 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 TRADDQ15628 312 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 IFI16Q16666 785 aaKnown RBP21.81■■□□□ 1.08
VPS53-201ENST00000291074 LMO3Q8TAP4 145 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 PDCD2LQ9BRP1 358 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.81■■□□□ 1.081e-6■■■■■ 243.8
VPS53-201ENST00000291074 WDR81Q562E7 1941 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 DOCK5Q9H7D0 1870 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 ZBTB7AO95365 584 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 ABCB4P21439 1286 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 PEX3P56589 373 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 ZNF280AP59817 542 aaPredicted RBP21.81■■□□□ 1.08
VPS53-201ENST00000291074 GLE1Q53GS7 698 aaKnown RBP21.81■■□□□ 1.08
VPS53-201ENST00000291074 RNF207Q6ZRF8 634 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 IFT81Q8WYA0 676 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 SYT11Q9BT88 431 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 PXMP2Q9NR77 195 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 NFU1Q9UMS0 254 aa21.81■■□□□ 1.08
VPS53-201ENST00000291074 KRT13P13646 458 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 GCLMP48507 274 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 HAUS6Q7Z4H7 955 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 MICALL2Q8IY33 904 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 METTL13Q8N6R0 699 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 PLEKHO2Q8TD55 490 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 ACCSQ96QU6 501 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 SEPT11Q9NVA2 429 aaKnown RBP21.8■■□□□ 1.08
VPS53-201ENST00000291074 TAS2R14Q9NYV8 317 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 HACL1Q9UJ83 578 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 KIAA1217Q5T5P2 1943 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 FOXN3O00409 490 aaPredicted RBP21.8■■□□□ 1.08
VPS53-201ENST00000291074 FAM153BP0C7A2 387 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 ZBTB48P10074 688 aaPredicted RBP21.8■■□□□ 1.08
VPS53-201ENST00000291074 FAM153CQ494X1 144 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 DALRD3Q5D0E6 543 aaKnown RBP21.8■■□□□ 1.08
VPS53-201ENST00000291074 PEX26Q7Z412 305 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 DAAM2Q86T65 1068 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 ARHGEF19Q8IW93 802 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 GDF3Q9NR23 364 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 TBC1D22BQ9NU19 505 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 FAM153AQ9UHL3 310 aa21.8■■□□□ 1.08
VPS53-201ENST00000291074 GOLGA8IPA6NC78 632 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 GOLGA8JA6NMD2 632 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 RAD51CO43502 376 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 CAPN2P17655 700 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 VAMP7P51809 220 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 C1orf220Q5T0J3 134 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 PRAMEF18Q5VWM3 479 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 PROCA1Q8NCQ7 364 aaPredicted RBP21.79■■□□□ 1.08
VPS53-201ENST00000291074 KIFC3Q9BVG8 833 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 TMEM206Q9H813 350 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 HSPBP1Q9NZL4 362 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 TNFRSF8P28908 595 aa21.79■■□□□ 1.08
VPS53-201ENST00000291074 GMPSP49915 693 aaPredicted RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms