RNA–Protein interactions for RNA: ENST00000582331.2

CCDC47-205, Transcript of coiled-coil domain containing 47, humanhuman

TSL 3

Gene CCDC47, Length 693 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-205ENST00000582331 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
CCDC47-205ENST00000582331 PTPRKQ15262 1439 aa12.54□□□□□ -0.4
CCDC47-205ENST00000582331 CCDC18Q5T9S5 1454 aa12.53□□□□□ -0.4
CCDC47-205ENST00000582331 TOM1O60784 492 aa12.53□□□□□ -0.4
CCDC47-205ENST00000582331 ZNF219Q9P2Y4 722 aaPredicted RBP12.53□□□□□ -0.4
CCDC47-205ENST00000582331 CLTCQ00610 1675 aaKnown RBP12.53□□□□□ -0.4
CCDC47-205ENST00000582331 CEP170BQ9Y4F5 1589 aaPredicted RBP12.52□□□□□ -0.4
CCDC47-205ENST00000582331 MYO3AQ8NEV4 1616 aa12.52□□□□□ -0.4
CCDC47-205ENST00000582331 ZNF142P52746 1687 aaPredicted RBP12.52□□□□□ -0.4
CCDC47-205ENST00000582331 CDC42BPAQ5VT25 1732 aa12.52□□□□□ -0.41
CCDC47-205ENST00000582331 FOXD4L1Q9NU39 408 aa12.51□□□□□ -0.41
CCDC47-205ENST00000582331 CASKIN1Q8WXD9 1431 aa12.51□□□□□ -0.41
CCDC47-205ENST00000582331 A2MP01023 1474 aa12.51□□□□□ -0.41
CCDC47-205ENST00000582331 SYCP2Q9BX26 1530 aa12.5□□□□□ -0.41
CCDC47-205ENST00000582331 MED1Q15648 1581 aaPredicted RBP12.5□□□□□ -0.41
CCDC47-205ENST00000582331 ATP7AQ04656 1500 aa12.49□□□□□ -0.41
CCDC47-205ENST00000582331 GPATCH8Q9UKJ3 1502 aaKnown RBP12.48□□□□□ -0.41
CCDC47-205ENST00000582331 KIAA1107Q9UPP5 1409 aa12.48□□□□□ -0.41
CCDC47-205ENST00000582331 CFDP1Q9UEE9 299 aaPredicted RBP12.48□□□□□ -0.41
CCDC47-205ENST00000582331 PLXNC1O60486 1568 aa12.47□□□□□ -0.41
CCDC47-205ENST00000582331 A2ML1A8K2U0 1454 aa12.47□□□□□ -0.41
CCDC47-205ENST00000582331 CPS1P31327 1500 aa12.47□□□□□ -0.41
CCDC47-205ENST00000582331 PLEKHH2Q8IVE3 1493 aa12.46□□□□□ -0.41
CCDC47-205ENST00000582331 SHANK2Q9UPX8 1470 aa12.46□□□□□ -0.41
CCDC47-205ENST00000582331 DNMT1P26358 1616 aaKnown RBP12.45□□□□□ -0.42
CCDC47-205ENST00000582331 INO80Q9ULG1 1556 aaPredicted RBP12.45□□□□□ -0.42
CCDC47-205ENST00000582331 ANKLE2Q86XL3 938 aa12.44□□□□□ -0.42
CCDC47-205ENST00000582331 FBXO31Q5XUX0 539 aaPredicted RBP12.43□□□□□ -0.42
CCDC47-205ENST00000582331 CCNB3Q8WWL7 1395 aa12.43□□□□□ -0.42
CCDC47-205ENST00000582331 TNRQ92752 1358 aa12.43□□□□□ -0.42
CCDC47-205ENST00000582331 FYCO1Q9BQS8 1478 aa12.42□□□□□ -0.42
CCDC47-205ENST00000582331 THEMISQ8N1K5 641 aaPredicted RBP12.42□□□□□ -0.42
CCDC47-205ENST00000582331 ADGBQ8N7X0 1667 aa12.42□□□□□ -0.42
CCDC47-205ENST00000582331 POLR1AO95602 1720 aaPredicted RBP12.41□□□□□ -0.42
CCDC47-205ENST00000582331 NEURL4Q96JN8 1562 aa12.41□□□□□ -0.42
CCDC47-205ENST00000582331 DHX29Q7Z478 1369 aaKnown RBP12.4□□□□□ -0.42
CCDC47-205ENST00000582331 KIF3BO15066 747 aa12.39□□□□□ -0.43
CCDC47-205ENST00000582331 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC47-205ENST00000582331 ZNF644Q9H582 1327 aaPredicted RBP12.38□□□□□ -0.43
CCDC47-205ENST00000582331 RTEL1-TNFRSF6BF6WH68 1400 aa12.38□□□□□ -0.43
CCDC47-205ENST00000582331 VWDEQ8N2E2 1590 aa12.38□□□□□ -0.43
CCDC47-205ENST00000582331 WASHC2CQ9Y4E1 1318 aa12.37□□□□□ -0.43
CCDC47-205ENST00000582331 NPHP4O75161 1426 aaPredicted RBP12.37□□□□□ -0.43
CCDC47-205ENST00000582331 MTUS2Q5JR59 1369 aa12.37□□□□□ -0.43
CCDC47-205ENST00000582331 PZPP20742 1482 aa12.37□□□□□ -0.43
CCDC47-205ENST00000582331 MED14O60244 1454 aa12.36□□□□□ -0.43
CCDC47-205ENST00000582331 MBD5Q9P267 1494 aa12.36□□□□□ -0.43
CCDC47-205ENST00000582331 ALKQ9UM73 1620 aa12.36□□□□□ -0.43
CCDC47-205ENST00000582331 MIA2Q96PC5 1412 aa12.36□□□□□ -0.43
CCDC47-205ENST00000582331 FAM135AQ9P2D6 1515 aa12.35□□□□□ -0.43
CCDC47-205ENST00000582331 NLRP1Q9C000 1473 aa12.34□□□□□ -0.43
CCDC47-205ENST00000582331 KDM5DQ9BY66 1539 aa12.34□□□□□ -0.43
CCDC47-205ENST00000582331 UGGT1Q9NYU2 1555 aa12.34□□□□□ -0.43
CCDC47-205ENST00000582331 DEPDC5O75140 1603 aa12.33□□□□□ -0.43
CCDC47-205ENST00000582331 LRRC7Q96NW7 1537 aa12.32□□□□□ -0.44
CCDC47-205ENST00000582331 ABCB7O75027 752 aa12.32□□□□□ -0.44
CCDC47-205ENST00000582331 RGS17Q9UGC6 210 aaPredicted RBP12.32□□□□□ -0.44
CCDC47-205ENST00000582331 RSPH4AQ5TD94 716 aa12.31□□□□□ -0.44
CCDC47-205ENST00000582331 IQGAP1P46940 1657 aa12.31□□□□□ -0.44
CCDC47-205ENST00000582331 TIAM1Q13009 1591 aa12.3□□□□□ -0.44
CCDC47-205ENST00000582331 RNF17Q9BXT8 1623 aaKnown RBP12.29□□□□□ -0.44
CCDC47-205ENST00000582331 CCDC141Q6ZP82 1450 aa12.28□□□□□ -0.44
CCDC47-205ENST00000582331 STRCP1A6NGW2 1772 aa12.28□□□□□ -0.44
CCDC47-205ENST00000582331 ZBTB22O15209 634 aa12.28□□□□□ -0.44
CCDC47-205ENST00000582331 SYNMO15061 1565 aa12.27□□□□□ -0.44
CCDC47-205ENST00000582331 TSPY4P0CV99 314 aa12.27□□□□□ -0.45
CCDC47-205ENST00000582331 TSPY10P0CW01 314 aa12.27□□□□□ -0.45
CCDC47-205ENST00000582331 CEP162Q5TB80 1403 aa12.27□□□□□ -0.45
CCDC47-205ENST00000582331 EHBP1L1Q8N3D4 1523 aa12.27□□□□□ -0.45
CCDC47-205ENST00000582331 POTEAQ6S8J7 498 aa12.24□□□□□ -0.45
CCDC47-205ENST00000582331 TXNDC2Q86VQ3 553 aa12.24□□□□□ -0.45
CCDC47-205ENST00000582331 CAMSAP2Q08AD1 1489 aa12.23□□□□□ -0.45
CCDC47-205ENST00000582331 ZC3H13Q5T200 1668 aaKnown RBP12.22□□□□□ -0.45
CCDC47-205ENST00000582331 ERVK-7P63135 1459 aa12.22□□□□□ -0.45
CCDC47-205ENST00000582331 SCAF11Q99590 1463 aaKnown RBP12.22□□□□□ -0.45
CCDC47-205ENST00000582331 LTKP29376 864 aa12.22□□□□□ -0.45
CCDC47-205ENST00000582331 ABCC3O15438 1527 aa12.21□□□□□ -0.45
CCDC47-205ENST00000582331 FAM135BQ49AJ0 1406 aa12.21□□□□□ -0.45
CCDC47-205ENST00000582331 EID1Q9Y6B2 187 aa12.21□□□□□ -0.45
CCDC47-205ENST00000582331 NCOA2Q15596 1464 aa12.21□□□□□ -0.46
CCDC47-205ENST00000582331 ARHGEF5Q12774 1597 aa12.2□□□□□ -0.46
CCDC47-205ENST00000582331 UBR1Q8IWV7 1749 aa12.2□□□□□ -0.46
CCDC47-205ENST00000582331 POLA2Q14181 598 aa12.19□□□□□ -0.46
CCDC47-205ENST00000582331 ARHGAP23Q9P227 1491 aa12.18□□□□□ -0.46
CCDC47-205ENST00000582331 XIRP1Q702N8 1843 aaKnown RBP12.18□□□□□ -0.46
CCDC47-205ENST00000582331 SLIT1O75093 1534 aa12.17□□□□□ -0.46
CCDC47-205ENST00000582331 CFAP65Q6ZU64 1925 aaKnown RBP12.16□□□□□ -0.46
CCDC47-205ENST00000582331 ATXN8OSP0DMR3 200 aa12.16□□□□□ -0.46
CCDC47-205ENST00000582331 ATF5Q9Y2D1 282 aaPredicted RBP12.16□□□□□ -0.46
CCDC47-205ENST00000582331 TMEM94Q12767 1356 aa12.16□□□□□ -0.46
CCDC47-205ENST00000582331 EIF2AK4Q9P2K8 1649 aaKnown RBP12.15□□□□□ -0.46
CCDC47-205ENST00000582331 KCNA6P17658 529 aa12.15□□□□□ -0.46
CCDC47-205ENST00000582331 PROSER2Q86WR7 435 aaPredicted RBP12.15□□□□□ -0.46
CCDC47-205ENST00000582331 STAG3Q9UJ98 1225 aa12.15□□□□□ -0.46
CCDC47-205ENST00000582331 MAST1Q9Y2H9 1570 aa12.14□□□□□ -0.47
CCDC47-205ENST00000582331 MROH1Q8NDA8 1641 aa12.14□□□□□ -0.47
CCDC47-205ENST00000582331 TMEM2Q9UHN6 1383 aa12.14□□□□□ -0.47
CCDC47-205ENST00000582331 CEP152O94986 1710 aa12.14□□□□□ -0.47
CCDC47-205ENST00000582331 RBM33Q96EV2 1170 aaKnown RBP12.13□□□□□ -0.47
CCDC47-205ENST00000582331 ROBO1Q9Y6N7 1651 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms