RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 TOM1O60784 492 aa15.3■□□□□ 0.04
SYNE2-224ENST00000557024 CDC42BPAQ5VT25 1732 aa15.3■□□□□ 0.04
SYNE2-224ENST00000557024 GPATCH8Q9UKJ3 1502 aaKnown RBP15.29■□□□□ 0.04
SYNE2-224ENST00000557024 RNF216Q9NWF9 866 aaPredicted RBP15.29■□□□□ 0.04
SYNE2-224ENST00000557024 A2ML1A8K2U0 1454 aa15.28■□□□□ 0.04
SYNE2-224ENST00000557024 ZBTB22O15209 634 aa15.27■□□□□ 0.04
SYNE2-224ENST00000557024 INO80Q9ULG1 1556 aaPredicted RBP15.27■□□□□ 0.03
SYNE2-224ENST00000557024 KIAA1107Q9UPP5 1409 aa15.26■□□□□ 0.03
SYNE2-224ENST00000557024 CFDP1Q9UEE9 299 aaPredicted RBP15.26■□□□□ 0.03
SYNE2-224ENST00000557024 CPS1P31327 1500 aa15.26■□□□□ 0.03
SYNE2-224ENST00000557024 SHANK2Q9UPX8 1470 aa15.26■□□□□ 0.03
SYNE2-224ENST00000557024 DNMT1P26358 1616 aaKnown RBP15.25■□□□□ 0.03
SYNE2-224ENST00000557024 FBXO31Q5XUX0 539 aaPredicted RBP15.24■□□□□ 0.03
SYNE2-224ENST00000557024 PLEKHH2Q8IVE3 1493 aa15.24■□□□□ 0.03
SYNE2-224ENST00000557024 NEURL4Q96JN8 1562 aa15.23■□□□□ 0.03
SYNE2-224ENST00000557024 TNRQ92752 1358 aa15.23■□□□□ 0.03
SYNE2-224ENST00000557024 FYCO1Q9BQS8 1478 aa15.22■□□□□ 0.03
SYNE2-224ENST00000557024 CCNB3Q8WWL7 1395 aa15.22■□□□□ 0.03
SYNE2-224ENST00000557024 ANKLE2Q86XL3 938 aa15.2■□□□□ 0.02
SYNE2-224ENST00000557024 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.2■□□□□ 0.02
SYNE2-224ENST00000557024 ZNF644Q9H582 1327 aaPredicted RBP15.19■□□□□ 0.02
SYNE2-224ENST00000557024 ALKQ9UM73 1620 aa15.18■□□□□ 0.02
SYNE2-224ENST00000557024 VWDEQ8N2E2 1590 aa15.18■□□□□ 0.02
SYNE2-224ENST00000557024 POLR1AO95602 1720 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-224ENST00000557024 NPHP4O75161 1426 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-224ENST00000557024 ADGBQ8N7X0 1667 aa15.16■□□□□ 0.02
SYNE2-224ENST00000557024 PZPP20742 1482 aa15.16■□□□□ 0.02
SYNE2-224ENST00000557024 DHX29Q7Z478 1369 aaKnown RBP15.16■□□□□ 0.02
SYNE2-224ENST00000557024 KIF3BO15066 747 aa15.16■□□□□ 0.02
SYNE2-224ENST00000557024 THEMISQ8N1K5 641 aaPredicted RBP15.15■□□□□ 0.02
SYNE2-224ENST00000557024 MBD5Q9P267 1494 aa15.14■□□□□ 0.01
SYNE2-224ENST00000557024 MTUS2Q5JR59 1369 aa15.14■□□□□ 0.01
SYNE2-224ENST00000557024 WASHC2CQ9Y4E1 1318 aa15.14■□□□□ 0.01
SYNE2-224ENST00000557024 KDM5DQ9BY66 1539 aa15.13■□□□□ 0.01
SYNE2-224ENST00000557024 RTEL1-TNFRSF6BF6WH68 1400 aa15.13■□□□□ 0.01
SYNE2-224ENST00000557024 MIA2Q96PC5 1412 aa15.13■□□□□ 0.01
SYNE2-224ENST00000557024 MED14O60244 1454 aa15.13■□□□□ 0.01
SYNE2-224ENST00000557024 FAM135AQ9P2D6 1515 aa15.12■□□□□ 0.01
SYNE2-224ENST00000557024 UGGT1Q9NYU2 1555 aa15.11■□□□□ 0.01
SYNE2-224ENST00000557024 NLRP1Q9C000 1473 aa15.11■□□□□ 0.01
SYNE2-224ENST00000557024 LRRC7Q96NW7 1537 aa15.11■□□□□ 0.01
SYNE2-224ENST00000557024 RGS17Q9UGC6 210 aaPredicted RBP15.1■□□□□ 0.01
SYNE2-224ENST00000557024 TIAM1Q13009 1591 aa15.09■□□□□ 0.01
SYNE2-224ENST00000557024 DEPDC5O75140 1603 aa15.09■□□□□ 0.01
SYNE2-224ENST00000557024 RNF17Q9BXT8 1623 aaKnown RBP15.06■□□□□ 0
SYNE2-224ENST00000557024 IQGAP1P46940 1657 aa15.06■□□□□ 0
SYNE2-224ENST00000557024 CCDC141Q6ZP82 1450 aa15.06■□□□□ 0
SYNE2-224ENST00000557024 STRCP1A6NGW2 1772 aa15.04■□□□□ -0
SYNE2-224ENST00000557024 SYNMO15061 1565 aa15.03■□□□□ -0
SYNE2-224ENST00000557024 FOXD4L1Q9NU39 408 aa15.03■□□□□ -0
SYNE2-224ENST00000557024 EHBP1L1Q8N3D4 1523 aa15.02■□□□□ -0
SYNE2-224ENST00000557024 CEP162Q5TB80 1403 aa15.02■□□□□ -0
SYNE2-224ENST00000557024 CACNB1Q02641 598 aaPredicted RBP15.02■□□□□ -0
SYNE2-224ENST00000557024 CAMSAP2Q08AD1 1489 aa15.01□□□□□ -0.01
SYNE2-224ENST00000557024 POTEAQ6S8J7 498 aa15.01□□□□□ -0.01
SYNE2-224ENST00000557024 ERVK-7P63135 1459 aa15□□□□□ -0.01
SYNE2-224ENST00000557024 ABCC3O15438 1527 aa14.99□□□□□ -0.01
SYNE2-224ENST00000557024 RSPH4AQ5TD94 716 aa14.99□□□□□ -0.01
SYNE2-224ENST00000557024 SCAF11Q99590 1463 aaKnown RBP14.99□□□□□ -0.01
SYNE2-224ENST00000557024 TSPY4P0CV99 314 aa14.97□□□□□ -0.01
SYNE2-224ENST00000557024 TSPY10P0CW01 314 aa14.97□□□□□ -0.01
SYNE2-224ENST00000557024 LTKP29376 864 aa14.97□□□□□ -0.01
SYNE2-224ENST00000557024 NCOA2Q15596 1464 aa14.96□□□□□ -0.01
SYNE2-224ENST00000557024 TXNDC2Q86VQ3 553 aa14.96□□□□□ -0.01
SYNE2-224ENST00000557024 ZC3H13Q5T200 1668 aaKnown RBP14.96□□□□□ -0.01
SYNE2-224ENST00000557024 FAM135BQ49AJ0 1406 aa14.94□□□□□ -0.02
SYNE2-224ENST00000557024 ARHGAP23Q9P227 1491 aa14.92□□□□□ -0.02
SYNE2-224ENST00000557024 ARHGEF5Q12774 1597 aa14.92□□□□□ -0.02
SYNE2-224ENST00000557024 UBR1Q8IWV7 1749 aa14.92□□□□□ -0.02
SYNE2-224ENST00000557024 TMEM94Q12767 1356 aa14.91□□□□□ -0.02
SYNE2-224ENST00000557024 EID1Q9Y6B2 187 aa14.91□□□□□ -0.02
SYNE2-224ENST00000557024 SLIT1O75093 1534 aa14.91□□□□□ -0.02
SYNE2-224ENST00000557024 RBM33Q96EV2 1170 aaKnown RBP14.9□□□□□ -0.02
SYNE2-224ENST00000557024 RNF39Q9H2S5 420 aa14.9□□□□□ -0.02
SYNE2-224ENST00000557024 MROH1Q8NDA8 1641 aa14.89□□□□□ -0.03
SYNE2-224ENST00000557024 XIRP1Q702N8 1843 aaKnown RBP14.88□□□□□ -0.03
SYNE2-224ENST00000557024 TMEM2Q9UHN6 1383 aa14.86□□□□□ -0.03
SYNE2-224ENST00000557024 EIF2AK4Q9P2K8 1649 aaKnown RBP14.86□□□□□ -0.03
SYNE2-224ENST00000557024 PROSER2Q86WR7 435 aaPredicted RBP14.86□□□□□ -0.03
SYNE2-224ENST00000557024 MAST1Q9Y2H9 1570 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 ROBO1Q9Y6N7 1651 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 KCNA6P17658 529 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 SLC26A8Q96RN1 970 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 STAG3Q9UJ98 1225 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 SETD1AO15047 1707 aaKnown RBP14.85□□□□□ -0.03
SYNE2-224ENST00000557024 CEP152O94986 1710 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 MAP3K1Q13233 1512 aa14.85□□□□□ -0.03
SYNE2-224ENST00000557024 SLC4A2P04920 1241 aa14.84□□□□□ -0.03
SYNE2-224ENST00000557024 ARHGAP31Q2M1Z3 1444 aa14.83□□□□□ -0.03
SYNE2-224ENST00000557024 LRRC9Q6ZRR7 1453 aa14.82□□□□□ -0.04
SYNE2-224ENST00000557024 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.04
SYNE2-224ENST00000557024 PIK3C2BO00750 1634 aa14.81□□□□□ -0.04
SYNE2-224ENST00000557024 JCADQ9P266 1359 aa14.81□□□□□ -0.04
SYNE2-224ENST00000557024 DUOX2Q9NRD8 1548 aa14.81□□□□□ -0.04
SYNE2-224ENST00000557024 SLAIN2Q9P270 581 aa14.8□□□□□ -0.04
SYNE2-224ENST00000557024 MSH6P52701 1360 aa14.8□□□□□ -0.04
SYNE2-224ENST00000557024 PRDM15P57071 1507 aaPredicted RBP14.8□□□□□ -0.04
SYNE2-224ENST00000557024 IDI1Q13907 227 aa14.79□□□□□ -0.04
SYNE2-224ENST00000557024 EFCAB6Q5THR3 1501 aa14.79□□□□□ -0.04
SYNE2-224ENST00000557024 UPF1Q92900 1129 aaKnown RBP eCLIP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms